Gene detail

Detailed information of XP_068691901.1 in Montipora foliosa

Genomic Location: chr2:30302447...30309394
NR annotation: CAH3141476.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068835800.1

ATGAAGCCCCTCAAAAATGAATCTGCCTTTTTTCTAAGTTGAGTTCTTAGACAAGACGTTGGCAATGACTTTCGCCCAGATCGTCGTTGTCTTGATTTTGGCTTTCGCGGTTGATGCTCTGGAATGGAAAAGTTGTGACAGGAGGGCTCCTGTGCAGATCCAAGAGATTAACCTTTCTCCAGAACCCGTGATTCTCAAGAAGGGATCGAGGATTACATTAAGCGGAAAGTTCAGAGTTTATGGTGATGTCGGAGAAAAATACCAGATCAACCTTACAATCAAGAAATCGGCGTTTTGGGGATGGTTGCGTGTGCCTTGCTTTGGTAAATGTACTCGTAATGTCGACTGCAGCCAGTTGATAAACTTACTAGAAGGCGAGAAATGTCCTCTGTCACCCAAGCAGTACGTCGTAAATGAGCGCACTGTAGTTTTACCAGATCTCAAGCTTCCTTCCTTCATCACCAAAGGAACATACAAGATTAAAGCTGATGTGAAAGACAGGGAGAAAAACCGGAAAATTTCTTGCCTGGAAGTTACAGTGAAAGTACAATAAGAccaaaattaaatacaaagaaaaaataaaaacaaaattcatgattgTAATGAAACTGTCTATTGACAACAACAAGTTCGGCGCTAGCATTTGGCTATTTCTCGGTCAGGGTTTCCGCAACTGTCCGTGCTTTCTTAAGGTGATttcctagtattgcactgcgcatcctgttctgcgcataacacagcgtagGCCACGTTCGTATTAAGGcacattctcgtccccagaggccGCGATTCTTTCGCTCAGTACCAAGAATAACGACCCCTGGCCGGTTCCGAAATACGCGCAGACTCAGTAGGGGTCTATTTTGATAGCCGTTGACAGCTActaattgtttcaaatttctgagattgcgcagacgagccggaagtccgtgattcgcgGACTTCCTGGTTCGGAACCAGCCAGAGATTGCCAGAGATCGTTATTCTAGGTGCTGACCGAAAGACTCGCggcctctggggacgagaatgattaaggcatggctaagaggctttatggtcaaatttcacggctcagttctgttttctttgtctcacaagtctcaacggatatttctaaacaatgtttgaatttaaccataaagactcgtagccatgtgtgaatatttcaaaatggcgaagaatggccgttttcagagcacagcagtaaagagcaaaacaggAAACcttttagactctcgcaaaacaaaaagtcgagtgatagctttgatgatgctaaagaacatttcagtacaacagtgaaagtgaaaccttgCTATCGgagagacgtgttgtcgaggggtcgagcttggtttgctttctgttttctcctaaacgaggttggtgacctatcttatttttggcataatttaaTTCTCTTACTCAtcctctttgtgctgtaaaaaaattttaaaaaatttacgtcagaaaaaaaagttacaggaaaaaaaggTTCCGTAGCCATCACtcatggacacaaaattgtctcttcgagatcacgcacccgaggaatatttgtagtcagtgccttttcaagacgtgtgcTTGAGCCAtagaacaaacattaaattattccttttgagcaatacaattcacctgttttgttattttaagaattaagtcaaagctgtgcttcctgttcctgcaaaacgtagcctgaaccgataGAACAAACtggtccttgatagatgaagttgcaacgattaaatgagtaacttgagcaagttatatctcgcgAACGTGACCcatttatttaattgcacatttcgagtgaccataatgtagggaacaatcgagaaaagtttaaagaaaatcttacgacaacttctattactaaggaatcaccttaattaaGGAGTGGACTTTGGGGGAACGCTCTGTGACATTTATCATCTGTATCTAAGGATACATGTGATGTTCAAGTTGAGACAGAATAAAACTGGGGAACACTTAGTAACACTTATCAAAATCGACTTGCTTCTAAGTTCGTGCACTTCTAGACATCTGACATTTTGTGCGACATAATTTCGTTTGGAGAGAATTCAATGCAACGCTTGATACTATTAGCAATTACTTTACCACATAAAACCTTTACAATTGATATCAAATCGATCCCCACCCACACAGTACCACAGCTTCCTCTCTTGATTTAAGAAGGTTCAATAATATGTGCTACATATGCATAAAATATACAACGAGagacttgttttactttcattgttcatttcagtttacagtgtccccaattagcgctccagcgctagaaccactagacacttaaataaagttcctttcctttgacGAAAAAGAGATTTCCCTATTTTTAAAATTGATATTCGAAGTAACCTGCCTAAGATTATCATCACTCAAACTTCAGCACGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02221	E1_DerP2_DerF2	ML domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003172	Domain	MD-2-related lipid-recognition domain	Interproscan
IPR036846	Homologous_superfamily	GM2-AP, lipid-recognition domain superfamily	Interproscan
IPR028996	Family	Ganglioside GM2 activator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17357	GM2 GANGLIOSIDE ACTIVATOR PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006689	Biological Process	ganglioside catabolic process	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0008047	Molecular Function	enzyme activator activity	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12383	GM2A; ganglioside GM2 activator	-	Exosome	ko04147	deepkoala