Gene detail

Detailed information of XP_068692974.1 in Montipora foliosa

Genomic Location: chr1:17951436...17992179
NR annotation: XP_029192830.2, neurexin-4-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068836873.1

GGAAATTGAAGTGCTATGGCGTTATTTGAAGCAATATTAAGGTTAAACAAAGACGTCTCACTCGCGCGACAAGGTAAAGAAGATTATGTTGACGGTGTGTTGACGGTCTGCGTATTGTGTACTCTCCACAGTATTTTCAATGCTCAGGTACAGAAGATATGTTCAGCTATCGGTGTGTTGACGGTCTGCGTATTGTTTGCACTTCAGTATTTTCAATGTTCAGCAAACGGCGACCGCATCATCATCTTCAAGGAGCCAATACCGAATATGACCATGAAAGACCACGTGATCAGTAGAGACACTGTATCGCATGAAGGAAGCTGCCGAGTCAACTGCTATCTGCATCCTGACTGTGTGTCTATTAACATGGGGCCCCTAACAGGAGGAAAGCTGACTTGTGAATTGAACAATGCTACTGCTCAAAAAGAGTCTGTCTTGAGTAGCATGGGAGGTCACACTTACTTGGAAATTGAGAATCCCTGCAGCAGCAGCCCGTGTCTGAATGGTGGAACATGTCAAGCCGGATTTACTAGTAAAGGATTTCGGTGCCTTTGTACCAACGGCTCCTATGGAATTAAATGCGAGATAGCAAAATCTTGTAGCCATATAAAACAACTGCATCCCGCAGCAGAGAGTGGAGCTCACTTAATCGATCCTGATGGTAAAGGAACATTAGCGCCTTTTAATGTCATCTGTAACATGACTGGCCAGAATGGAGCTGGCGTGACAGTCATCAGTCACGACAGTGAGAACAGAACATTGGTGGATGGGTGCAATTGGCCTGGGTGTTACTCACGTGACATTCATTACACCGGAGTGAGCCTTTCCCAACTGGCGATGCTCACGACAGTCTCAGCACACTGCGAACAGTTTATCAAGTACGAGTGTTATCACTCTAAATTGCTTGCACCCAGTCATAATCCCAGTGGATGGTGGGTATCCCGAGATTCAAACAAAATGACGTACTGGGGCGGAGCAACTCCTGGAAGTGGCAAATGCGCATGCGGGATGACTTCGTCATGTGCAAGACAAAGTAATGTTTGTAATTGTAACAAAAATGACGCACAGTGGCGTGAGGACAGCGGTCTGCTCACTGACAAGTCCACCCTTCCAGTCAAAGAGCTGAGATTTGGAGACGTTAAAAAAAGCAACCAAGGCGATGATGAAAAAGGCTACCATATCTTGGGGAAATTGAACTGCTATGGAGTTATTTGAAGCGTAAATTTGGGTGATTTAACAGAGACGTATCACTTGATAGCTCTgctgtttttttgctttttttttttttaacatcagAAATGATCAAAGGAAGCCGAATAATACACCAGTGATATACCTGAAAATAAGTGTTTTTTTGCCATTGATCGGACAGTAGATATATAGTTTCCTTATTTTACGGCCTTGCGTGTTTCTCGGTGTAATCCAGCAAACATCAAACAACTTTGTTTCGAAACGATTCTGTTTATCTTCCTATTCCCATTAGATGAATCGTCCCTTTGATATTTTAAACTTGATGGACACATTTGTCAGCGAATTGTcgaatataataaaaaaaaaatgaaaaggcGCGAAATTTATCTTCTTTGTGGGAGAAAGTGcaggttttttttaacattaaatATCGCTTGCCCGTTTATCCTCCTTATAGTTTCGCtatgtttcttttttataaGGGTAGGGGTACAACAGTATTCGTGAAAATTCCTCAAAGCGAAGTtaagatcgactgaaactcagcctaaatagaccactttcgatttatATATTAagattcagtcctaaacaaaagacatgaTCTCGAGGATTTGTATGATTTCATTCCTCGGAGCCTCGAaatgataccttttgtttaggacttattttaatatttagatttagccaggcctaaaagcgtagctccctggttatttattcttactgcctgtagggttaatGGAAATAAACGGTTTCGAAGTGTCCCTCGTTTTGATTTtcccggttgctgctttaataattaaatcattttctttgccttCTTCGATAGAAAATTTCATTGCCTAACTActgaattccacggtacattttacgctaaaaactgatatcgcatgaatcacgaagcgatgagtacgatatcggtttttcgagtgaaaattactttggaattcattagtttggcaatgaatttttcttgaaccgcatgagttttaaaagaaaacaagcacactcTCAGCGAACGAAtggaaaactgagaaaaaaaaagccgccgctctccgaaaaaaatcggaaaggagcgtctgtgatttaccttTGATAATCGTGTTCAAAACAatgtgatttttcctggaatgtgtgaaaaatgatttgattggttattacccttcgatcattacatcattgaaacaacgagttttgattggcttttacttTTGTTTCTCCACGTCAACACCGTGAAAACCAacgtgagagattttacgatgagttcgtgtgtactttgtgCAAGGTAAAAGAATACGAACAAAAATCTTTTTTGATGGTCGaagggtttttctttttaagtacGTGCGGagttgttatctatggagtatAAAGTGGA

Protein

Uniprot

Uniprot term	Description
O54991	Contactin-associated protein 1 OS=Mus musculus OX=10090 GN=Cntnap1 PE=1 SV=2
P97846	Contactin-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Cntnap1 PE=1 SV=1
P78357	Contactin-associated protein 1 OS=Homo sapiens OX=9606 GN=CNTNAP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan