Gene detail

Detailed information of XP_068693859.1 in Montipora foliosa

Genomic Location: chr2:11212773...11244373
NR annotation: XP_044163791.1, asparagine--tRNA ligase, cytoplasmic-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068837758.1

TCCTCGAAGGCTCACCCTTGCTGATGCAACACACCCGCAATTCACATCTTTTCTTCGAAATATTGGGAAAGTGAGTTTGTTCTTGCGGTGATATTTACGGTAAAAGAAATTGTTAGGAAATTGACTAGAGGACTATGGCCGCCGATTCTCTCAGTTCCGACATGGAGAAAATGGATGTACAAGGCAATGGTCCAGTGATCTACACCTCAGAAAAGGAAGGAAGTGATGAATCAGGGGATGGGTCATTACAGAAGCCATTCAAAACTGTGATGCGGGCCCTTTTTCTTACTGAAAATGAAGAAGCACCACCTCAGATTATGGTTGATGGTAAAGAGGAAGGAGAGAGGTATGAAAAGCTTGCCAAGGCACAGTTGAAGAAGGTCACAAAGTTGTATGCACAAGAGAAAAAGAAGTCTGAAGAACGAGAGAAAAAAGAGGCTGAAAAAGCTCAGCAGAGGGAAAAGAATCTTGAGGAAGCCAAGAAAATAACAATCAAAGAAGATGAGACTTTGCCACCAGCAAAGAGGATAAGGATAAGAGAGTCTGTCACTCATCGCGATCAGAGATTGAAGGTGTTTGGCTGGGTTCATAGACTTAGGCGACAGGGCAAAAACCTGATGTTTATTGTACTTAGAGATGGAACTGGATTTCTACAGTGTGTCTTATCTGATCAGTTGTGTCAGACCTATGAGGCTGTTACATTGTCCACCGAAGCATCTGTGTGTCTTTATGGTGTCATCAAAGAGCTCCCTGAAGGCAAAAAAGCTCCTGGAGGCCATGAAATGGCTGTGGACTTCTGGGAACTGGTTGGAGAATCCCCCGCTGGTGGATTGGATAACTTGGTGAATGAGGAATCCGCCATTGACACTCAACTTGACAACAGGCACATAATGCTCAGAGGTGATACGGTGTCAAGAATCCTAAGAATGCGCTCCACAGTAACGCAGtgCTTTAGAGATCATTATTTCAACCGTGGTTATGTTGAGGTTACTCCCCCAACTATGGTTCAAACGCAAGTTGAAGGAGGTTCTACGCTCTTTGAATTTAGCTACTTTGGTGAAAAGGCATATTTGACACAGTCATCCCAACTTTACCTGGAAACAGTTATACCATCCCTTGGTGATGTATTCTGTATAGCACAGTCATATAGAGCGGAGCAGTCACGCACAAGAAGGCATCTGTCAGAATACACTCATGTTGAAGCAGAATGCCCTTTCATAAGTTTTGATGATCTTCTGGACAGAGTAGAGGACTTGGTTTGTGATGTTGTTGATAGAGTGTTAAAGTCTCCCAATGCAGAAGTACTGAAAGAATTGAATCCAaatttcaAGCCCCCAAAAAGGCCTTTCAAGAGAATGAATTATGCTGATGCTATTGTGTACCTAAAAGAGAATAAAATCACAAAGGAAGATGGCACGTTTTATGAATTTGGAGAGgATATCCCTGAAATGCCAGAAAGGAAAATGACAGATAAAATCAATGAGCCAATCCTGTTGTGCCGTTTTCCCACTGAGATTAAGTCATTTTACATGTTCAGATGTCCAGAGGACAAGCGTGTTACTGAATCAGTTGACCTGTTAATGCCTGGAGTTGGAGAGATAGTTGGTGGATCTATGAGGATGTGGCATTATGATGAATTATTGGCAGGTTACCAAAGAGAGGAAATTGATCCCACCCCTTACTATTGGTACACTGACCAGAGAAAGTATGGGTCATGCCCACACGGGGGTTATGGTTTGGGACTGGAGCGCTTCCTGACGTGGCTTTTAAACAGGGACCACATCAGAGATGTTTGTTTGTACCCTCGGTTTACCGGAAGGTGTCGACCATAGGCGAAGCAGCCAAGAGACTTCTTGAATTAAAATACGCTACCAATTTAATTAGCCCTTAGGTAATACATGTAGAAAAGTCTGTCCACTACTGTAGGCCTTGAGGCCTTCAGTGAACTGGTTGATAGCAGAAGATCAGAATGAAATAAACGAAACTGCATAAATACAGTATTGGAATTTGTAGAATGTTTGTCTACTTTCTGGTAGAGGGCCTTTCTGAGACAACTCCgctttttgttttgcttaaccccaatttgaaaaaaggtttaAATAAATTACAAGGCCTGTCCCTTCACTGAAGGCTGTTAATATTATTGCTGGAAGCAATGTTGCAATTAAGTTATGCACAGATCCTTTCAACCAAACTACTTATCAGCTTCTCAAGCTTCTCTCTACCTCGGCAATGGTTCTTATTAATGGAAAGTGGATGACAAGAGGAGCAGGATATAGGAAGGAATTGCCTTGCAAGTTTAAATTTCAAGGAGACAAAATAATTTTCGTGCGACTGGCTTGAAGAAAAGTTAGAAAAGGATAATTTTGATTTACTGTAATGAAAATAAAGCTTATTGTAATTGAAATGACTATGTTTTGTCTTGGACAGTATGCGATTAAATCATTAAAATCAATCCTGTGCCGTTAGAAa

Protein

Uniprot

Uniprot term	Description
Q2KJG3	Asparagine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=NARS PE=2 SV=3
O43776	Asparagine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=NARS1 PE=1 SV=1
Q4R4Z1	Asparagine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=NARS1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20917	AsnRS_N	Asparaginal-tRNA synthetase, N-terminal domain	Domain	Interproscan
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048952	Domain	Asparagine--tRNA ligase, N-terminal domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR002312	Family	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	Interproscan
IPR004522	Family	Asparagine-tRNA ligase	Interproscan
IPR004364	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004365	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22594	ASPARTYL/LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004816	Molecular Function	asparagine-tRNA ligase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006421	Biological Process	asparaginyl-tRNA aminoacylation	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01893	NARS, asnS; asparaginyl-tRNA synthetase	EC:6.1.1.22	Transfer RNA biogenesis	ko03016	deepkoala