Gene detail

Detailed information of XP_068694161.1 in Montipora foliosa

Genomic Location: chr2:19445533...19461334
NR annotation: XP_015765213.1, PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068838060.1

AGtgacgaaaacaaaatggctggcTGGGTGTTGTGTGGAGTTGAGTTTTAGTTTATATTGAATTTCCTATTTTACTCTCGTGTGTAAATATAGCAAGTTTTTTAATGTACCTTGTAAGTGCGAAAGATTTGTATTTTTCGTTAAATTCGACCTCTTTTATTCCAATTCACGGAAATTTGTGTTGGTAAGGGTTCAACTGTTGTGTTGTTGCGGCCTAAAGTTGAAACACCATGTTTAGAATACCGGGTTCTTTACGCCGTTTTGGGGGAAAGAGCAAGCAAATATTCTGTCCCAAAGaATGTGCTTCATCATGCTGTAGACTTTCTTCTATAAGAAGATTACACAGTCTTGGTTTAAGAGAGAAGCGAGCATCCTCAGCTGTAATAACAAGAACATCTCTAAGAGTTTCATTCCATGGTCATAGATATGTTTCATCAGCTAGTAATGGAAGCAAAgacaaaaatggaaaaggaTCAGCTGGAAACCAGTGGAGCTGTCCCAAATGTGGAAATCCATGTACTACTGTGAAACCAACAACACGTTTTGTCCAGTGTGACAAGTGTGATCactttttcttaattttatcGGAAGCAGATTCTGCAAAGCGATATATCCACGTTCATTATGATAAAGCATCAAGTAATGAAGAAGAAAAGCAAGGCAAGGTTTTACAATgtccaccaccaccaccaagAAAGATTTATGATTACTTAAACAAATACGTAATTGGCCAAGGTCACGCCAAGAAAGTTTTGTCAGTTGCAGTTTATAATCATTATAAGCGACTATCAGTTAACCTTCCCCAAACGCAGCAAGCTTCTACTCCATCTGAAGTCAAACCAGTGCCTCTTAAAAGACCATTTCCTGGATCACCACAGGAATTACAGATGCTCATGATGCAGACATCTAATCTGAATTCTCCCTTGGGAGCAAGTGGTGTTCATCCCTCAACACAGCCTCGTGAACAAGCAGGAAGTGACATACTGGACTCAGAGGTGGAAAAGATCCAACTTGATAAGAGCAACATCCTACTCCTTGGGCCTACTGGCTCAGGAAAAACTTTGTTAGCACAAACTATAGCTCGATGTCTTGATGTTCCATTTGCAATCTGTGATTGCACTGCCTTGACACAAGCTGGTTATGTTGGAGAAGACATTGAATCGGTCATTGCAAAACTCTTGCAGGAAGCAGGTAACAGTGTTGAAAGAGCCCAGCAAGGAATTGTGTTCTTGGATGAAGTTGACAAGATCAGCTGTGTTCCTGGAGTGCAAAATCTGAGAGATGTTGGTGGAGAAGGAGTACAACAGGGCTTGTTAAAGATTCTTGAAGGCACAACAGTCAATGTTCCTGAGCGGAATTCGCGCAAAATCCGAGGCGACAGTGTATCAGTGGATACTACAAACATCCTATTTGTCGCATCTGGAGCCTTTAATGGACTAGATAAAATTATTAAGAGAAGAAACCAAGAAAAGGTTATAGGTTTTGGTGCCCCAACAAGTGATAGAGGCTCCAAACAGAAACATCTTGACATCTTCAAGAACTCGCAACCAGATGTGAGGGATGACAACGCTGAGCGGGACAAACTCCTTAGCGTGGTTGAAGCGCGGGATCTGGTGGAGTTCGGGATGATACCCGAGTTCGTGGGTCGACTTCCTGTGGTAGTAAGTCTGCATTCGTTGGATGAGGATTCACTTGTCAAGATCCTGACTGAACCGAGAAATGCACTGGTTCCACAGTATCAAGCACTCTTTACCATGGACAAGGTGGAGCTAAATCTCAGCCCAGAAGCTTTAAAATTGATTGCTAAACAAGCATTGGAAAAGAAGACTGGAGCTCGTGGTTTGAGAGCCATACTTGAAAACCTACTGTTGGAGCCCATGTTTGATGCTCCGGGATCCAACATTCGGGCAGTATATGTTGATGAACACGTGGTACAAGGGGACAAAAAAGCTGAATATATTCTAGCCCCAGAAGAAGAGGTCCCAATGGATACAAACGAGGCTTTCAACGAAGAGGAACTAAGATATGCTGGGGATGCCTCCTCAAGAGTGTAATATGTGATCAATGTCGACACTGACATCCTCTCTAATGTGTAAATGGTCAATGTGTTTCATTTGGAGCAAATCATTACAACTGCTGATACGCTGAAATAAGAATTTCACAATTTATCGTAGCTATTTTATTGTATAAAAGCCTTCAAAATAACCGACGTTTCTGGCAAAGGCACCCAAACGATCGACTAAGCGTTTCTCTCAGAGATAAATACTTCGCTTTCAATTCTGCATGCTCGATGTGATTAATGTAAAACGAATGTCGGAAGAAATGGTTCTCAGTggaaattttcttcttttttttacctttttcctCTCAGgaaaagattttttcttataaCCTGATTGTACAAAGAATTTAATATCTGATAAAGACATATCGACTTGTA

Protein

Uniprot

Uniprot term	Description
Q5U2U0	ATP-dependent clpX-like chaperone, mitochondrial OS=Rattus norvegicus OX=10116 GN=Clpx PE=2 SV=1
Q9JHS4	ATP-dependent clpX-like chaperone, mitochondrial OS=Mus musculus OX=10090 GN=Clpx PE=1 SV=2
O76031	ATP-dependent clpX-like chaperone, mitochondrial OS=Homo sapiens OX=9606 GN=CLPX PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07724	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF10431	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050052	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004487	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR019489	Domain	Clp ATPase, C-terminal	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48102	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03544	clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX	-	Chaperones and folding catalysts	ko03110	deepkoala