Gene detail

Detailed information of XP_068695347.1 in Montipora foliosa

Genomic Location: chr2:49036105...49065284
NR annotation: XP_044177506.1, helicase SKI2W-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137993409

ATGAGTAGGAACTTAATTCCGGATTACTTCGACAATAAGGAGGGAAACGGCATGAAGGAGAAAGAAGCCAATGATGAATGTGATCCACTGGAGTATGAATTTGATCTTCTGGAAATTGGCTGCACTGGAACAATCGAGGTCATCCCACAATCAATCAACAAAACATCAAAGAAAGAGCTGAAGCCTCTTACAACACTTCCCTCTGGTCTGCCACCTTTATTTGCTCCAGATTTGAAGTGTGATTTGGAGAAATATCTCCTGGATCCCACATCACTGCCCATTCATGACTTTCATAAAACTCAAAGGTTCTGGCCTCGTGAAAGAGATTCAGAGAGCTTACTCTTTGCAGATGTCTGTCCAGTTCCATCAACATTGAAAGTGGAGAGAAATCCTACAACTGGAGAGCTTCTTGGTTATAACGAGGTCATGTTGACAGATACTGGTTCTACAGCCAAGAATTCTATGTCCCTTTTGCGACAGCCTGGACCACTATCTGCCTCTGTGAGAGGAGAGTCGACCAATTATCCCTTTTTACCAGGTGGCATGGAGACCCAGGAAACTTCAAAAGCAGGCCTTGTTTTAGATGGAGAATTGAATTTTGAAAAAGACCTTCTATCTATGCCACCAGGTTTTACCACAGGAGTGTTTTTTAATGACGTCAAAGAAGGAGAAGAAGAAGAAGTCATTCATTTAGAGAAAGATTTATCCACAAGTACATCAACACCTCAAGTTCTTGCTATGGCTGATATCATGGCTGGAACAACTCTTGAAGATCTGGAGTACAGTGATGAAGAAGATGAACTGGAGTCTGATGAAAGTGATGCAGATGAGATTCCTGGAAAAGAAGAATCTAATGTCGAACAAGGAGATATCATTGAGGGGAATGCAGGAGATAGTCTTGAAAATGTTTTAGTGAAGGAACAAGCCTCAGCAGGGAACAAATTTACCTCAGCTGCTCCTGTCACTGAAAAACCAGTCAAACAACAGTGGGCGGTAAAAATAAATGTGACAGAACCAGTGAAGGATTTTCACAAACGTGTCCCTAATATGGCGCACAAGTGGCCGTTTGAACTGGACACATTTCAAAAACAAGCTGTTCTGTGTTTGGAAAACAACGAGTGTGTATTCGTTGCAGCTCACACCTCTGCTGGGAAGACGGTTGTCGCCGAGTACGCCATTGCCTTGGCTAACAAACACATGACAAAGACTGTGTACACCTCCCCTATCAAAGCGCTATCTAATCAGAAGTTTCGCGAATTTAAGGACACATTTGAAGATGTTGGTTTGTTGACTGGTGATGTTCAAATCAGACCTGAGGCGTCTTGTCTTATCATGACAACAGAAATTCTGCGTTCCATGCTGTACAATGGTTCTGACACAATAAGAGATGTGGAGTGGGTGATTTTTGATGAAGTCCATTATATAAATGACGAAGAGAGGGGTGTGGTCTGGGAAGAGGTGCTGATCATGCTACCGGCTCAGGTCAAAATTATTTTGTTGTCGGCCACGGTACCAAACACCCTGGAATTCGCAGACTGGATTGGCCGCACCAAGAGAAAGAAAATCTACGTCATCAGCACCCCGAAGCGCCCAGTCCCCCTGGAGCACTTCCTTTACACGGGCAACAGCAATAAAACGAGTAACGAACTGTTTATGATCGTGGATGCCAATAGTAATTTCCTGACCCGCGGTCACGAGGCTGCTGTAGCAGCGAAAAAAGCCCGGGAAGGAAAAAGCAAGGACGCGTATGGCCCCAAGTCACACCAAGGTACCAACATCAAAGAGGAACGTAATATCTGGCTTTCCTTGATTGAGATGCTGCGAAAGAAGGAAAAGCTACCAGTGGTCGCTTTCACCTTCTCAAGAAAGAGATGCGACGAAAACGCGGATCAACTGGGAAATCTTGACCTCACCACATCCACGGAAAAGAGTTTAATCCATGTTTTTATTAAGAAATGTGTGGCAAGACTTAAAGGAAGTGACAGAGATCTACCTCAAGTTTCCAGGATACAAGAGCTCTTGAAACGTGGGCTTGGTGTTCATCATAGTGGAGTACTGCCTATCATCAAAGAGATGGTGGAAATGTTGTTTGGAAGAGGACTAGTAAAGATTCTGTTTGCTACCGAGACGTTTGCAATGGGAGTAAACATGCCCGCTAGAACAGTGGTGTTTGATTCAATAAGGAAACACGATGGAACTAACTTTCGAGATCTGTTATCCGGTGAATATATTCAAATGGCTGGCCGCGCAGGACGGAGAGGGCTGGACCCGACCGGAACCGTAATTCTTCTTTGCAAAGGCAGTGTCCATCTAATGGCTGATCTGCACAAAATGATGTTGGGCAAACCAACACAGTTGGTTTCCAGGTTCCGTCTCACGTACTCCATGATTCTGAACCTTTTGCGCGTCGAAGAGCTGCGTGTGGAAGACATGATGAAAAGAAGCTTTGCGGAGTTTCACGTTCAGAAAGATTCACAAGAAAGAAAGCGCGAAATGGACGAATTAGAGAAAAAGCTGCTAGATATCAAGGAGCTGGAGTGTACGTTTTGCTCCGAGGATTTAAAATACTACTTCAAGACTTGCAAGGAGCTGTCAGAAGTAACGCGAACTGTTCAGGCTGCAATTCTGTCTTCTTCTCATGGTCAGCGGGCTCTCTCTCCAGGCCGTGTCGTCACTATAAATACCGCTGAACACAGAAATGCGCTCGCTGTGATATTACAAGCGGAAAATTCTTCCAACCAGGGCTACTCGACCATACATTCTCATCGATGTTCAAGTCCGGAAGAGAGGAAGTTTCTCGTCCTCGTGATAAGTGACTTACACGAACAATCCCCTGTGAACAACGTTTCTGCTGCGCCCACGCCAAGCGTGTCTTCAACAGCTAAAGAAGGCCTTACAGAGGAAATACAGCCGTTTGTAAAACGAAAGTTATTTTTACCCGAGGGACGATGTTCTCATAGGGTCATGCATGTGAATGGAAGTGAAGTTAGCGCTATTTCTGTTCGCGCAATGAAGGTGGATACAAGCAAAATCATCGCTGATCACAAAAAGAGAATGCAGCCGAGATTCAGGAATGACCCGCCTGGTAAAACTACCATTTCAGCGGAACAGGAGCTACTAAGATTGTCCGAGGCCAATCCTGAGGGACTGAGTACTATGGATCCTGTCAGAGATTTTAACATCCGGGACATCGATATGGTAACAACCATAGCGCGGAAACAGAGCCTTGAAGATACAATATCCAACTTCAAGTGTTTAGACTGTCCAAAGTTCACAGAACATTTTAAATCTATTGCGAACCAGATGAGGTTACGGGAACACGTGACCACGCTCCGTTTTTTGTTGTCAGATGAAAGTCTGCAACACAGAGAGGAACTGCGGCAAAGAATTCAGGTGCTACAGAGATTGCGTTATGTGGATTCCAACAGTGCTGTGCAGCTTAAAGGAAGAGTAGCATGCGAGATAAGCAACCACGAACTCATGATTACAGAGCTTGTGTTTGAAAATGCCTTCACGAATTTGCATCCCACGGAAATAGTTGCTTTACTGTCATGCTTTGTTTTCCAGCAGCGCCGTTGCAGTGAACCTGAACTAACAAAGACATTAAAGGAGGGCAAGGAGCGCATCTTATCCATGGCTGAGCGGATCGCCTGCCTTCAGTCTGAGTGCGGTCTGATCACATCAGTCGAAGAATTTAAAGAGCAGTACAGGTTTGGTTTGGTTGAGGCAGTGTTTGAGTGGGCGCGCGGGATGCCTTTCGCTGAAATAACAAATCTGACAGACGTACAGGAAGGAATTATTGTTCGATGTATACAGCGATTGGATGAGACGTGCCGTGATGTCAGGAACGCTGCTCGTATCATAGGCGATCCAAGACTTGGCGAGAAAATGGAGGAAGCCTCTGCCATGATCAAACGAGACATCGTTTTTGCTGCGAGTCTTTACACACAGTGA

Transcript

rna-XM_068839246.1

ACCAGTTTCTCACTTGGATCCCGGTCAAGATGGCGGATGGAAGTTAGGTACATATGGATTATACACCGAAGATAAAATAAATTGGTGGAAATGAGTAGGAACTTAATTCCGGATTACTTCGACAATAAGGAGGGAAACGGCATGAAGGAGAAAGaAGCCAATGATGAATGTGATCCACTGGAGTATGAATTTGATCTTCTGGAAATTGGCTGCACTGGAACAATCGAGGTCATCCCACAATCAATCAACAAAACATCAAAGAAAGAGCTGAAGCCTCTTACAACACTTCCCTCTGGTCTGCCACCTTTATTTGCTCCAGATTTGAAGTGTGATTTGGAGAAATATCTCCTGGATCCCACATCACTGCCCATTCATGACTTTCATAAAACTCAAAGGTTCTGGCCTCGTGAAAGAGATTCAGAGAGCTTACTCTTTGCAGATGTCTGTCCAGTTCCATCAACATTGAAAGTGGAGAGAAATCCTACAACTGGAGAGCTTCTTGGTTATAACGAGGTCATGTTGACAGATACTGGTTCTACAGCCAAGAATTCTATGTCCCTTTTGCGACAGCCTGGACCACTATCTGCCTCTGTGAGAGGAGAGTCGACCAATTATCCCTTTTTACCAgGTGGCATGGAGACCCAGGAAACTTCAAAAGCAGGCCTTGTTTTAGATGGAGAAttgaattttgaaaaagACCTTCTATCTATGCCACCAGGTTTTACCACAGGAGTGTTTtttaatgacgtcaaagaaggagaagaagaagaagTCATTCATTTAGAGAAAGATTTATCCACAAGTACATCAACACCTCAAGTTCTTGCTATGGCTGATATCATGGCTGGAACAACTCTTGAAGATCTGGAGTACAGTGATGAAGAAGATGAACTGGAGTCTGATGAAAGTGATGCAGATGAGATTCCTGGAAAAGAAGAATCTAATGTCGAACAAGGAGATATCATTGAGGGGAATGCAGGAGATAGTCTTGAAAATGTTTTAGTGAAGGAACAAGCCTCAGCAGGGAACAAATTTACCTCAGCTGCTCCTGTCACTGAAAAACCAGTCAAACAACAGTGGGCGGTAAAAATAAATGTGACAGAACCAGTGAAGGATTTTCACAAACGTGTCCCTAATATGGCGCACaagTGGCCGTTTGAACTggacacatttcaaaaacaagctGTTCTGTGTTTGGAAAACAACGAGTGTGTATTCGTTGCAGCTCACACCTCTGCTGGGAAGACGGTTGTCGCCGAGTACGCCATTGCCTTGGCTAACAAACACATGACAAAGACTGTGTACACCTCCCCTATCAAAGCGCTATCTAATCAGAAGTTTCGCGAATTTAAGGACACATTTGAAGATGTTGGTTTGTTGACTGGTGATGTTCAAATCAGACCTGAGGCGTCTTGTCTTATCATGACAACAGAAATTCTGCGTTCCATGCTGTACAATGGTTCTGACACAATAAGAGATGTGGAGTGGGTGATTTTTGATGAAGTCCATTATATAAATGACGAAGAGAGGGGTGTGGTCTGGGAAGAGGTGCTGATCATGCTACCGGCTCAggtcaaaattattttgttgtcgGCCACGGTACCAAACACCCTGGAATTCGCAGACTGGATTGGCCGCACCAAGAGAAAGAAAATCTACGTCATCAGCACCCCGAAGCGCCCAGTCCCCCTGGAGCACTTCCTTTACACGGGCAACAGCAATAAAACGAGTAACGAACTGTTTATGATCGTGGATGCCAATAGTAATTTCCTGACCCGCGGTCACGAGGCTGCTGTAGCAGCGAAAAAAGCCCGGGAAGGAAAAAGCAAGGACGCGTATGGCCCCAAGTCACACCAAGGTACCAACATCAAAGAGGAACGTAATATCTGGCTTTCCTTGATTGAGATGCTGCGAAAGAAGGAAAAGCTACCAGTGGTCGCTTTCACCTTCTCAAGAAAGAGATGCGACGAAAACGCGGATCAACTGGGAAATCTTGACCTCACCACATCCACGGAAAAGAGTTTAATCCATGTTTTTATTAAGAAATGTGTGGCAAGACTTAAAGGAAGTGACAGAGATCTACCTCAAGTTTCCAGGATACAAGAGCTCTTGAAACGTGGGCTTGGTGTTCATCATAGTGGAGTACTGCCTATCATCAAAGAGATGGTGGAAATGTTGTTTGGAAGAGGACTAGTAAAGATTCTGTTTGCTACCGAGACGTTTGCAATGGGAGTAAACATGCCCGCTAGAACAGTGGTGTTTGATTCAATAAGGAAACACGATGGAACTAACTTTCGAGATCTGTTATCCGGTGAATATATTCAAATGGCTGGCCGCGCAGGACGGAGAGGGCTGGACCCGACCGGAACCGTAATTCTTCTTTGCAAAGGCAGTGTCCATCTAATGGCTGATCTGCACAAAATGATGTTGGGCAAACCAACACAGTTGGTTTCCAGGTTCCGTCTCACGTACTCCATGATTCTGAACCTTTTGCGCGTCGAAGAGCTGCGTGTGGAAGACATGAtgaaaagaagctttgcggagTTTCACGTTCAGAAAGATTCACAAGAAAGAAAGCGCGAAATGGACGAATTAGAGAAAAAGCTGCTAGATATCAAGGAGCTGGAGTGTACGTTTTGCTCCGAGGATTTAAAATACTACTTCAAGACTTGCAAGGAGCTGTCAGAAGTAACGCGAACTGTTCAGGCTGCAATTCTGTCTTCTTCTCATGGTCAGCGGGCTCTCTCTCCAGGCCGTGTCGTCACTATAAATACCGCTGAACACAGAAATGCGCTCGCTGTGATATTACAAGCGGAAAATTCTTCCAACCAGGGCTACTCGACCATACATTCTCATCGATGTTCAAGTCCGGAAGAGAGGAAGTTTCTCGTCCTCGTGATAAGTGACTTACACGAACAATCCCCTGTGAACAACGTTTCTGCTGCGCCCACGCCAAGCGTGTCTTCAACAGCTAAAGAAGGCCTTACAGAGGAAATACAGCCGTTTGTAaaacgaaagttatttttaccCGAGGGACGATGTTCTCATAGGGTCATGCATGTGAATGGAAGTGAAGTTAGCGCTATTTCTGTTCGCGCAATGAAGGTGGATACAAGCAAAATCATCGCTGATCACAAAAAGAGAATGCAGCCGAGATTCAGGAATGACCCGCCTGGTAAAACTACCATTTCAGCGGAACAGGAGCTACTAAGATTGTCCGAGGCCAATCCTGAGGGACTGAGTACTATGGATCCTGTCAGAGATTTTAACATCCGGGACATCGATATGGTAACAACCATAGCGCGGAAACAGAGCCTTGAAGATACAATATCCAACTTCAAGTGTTTAGACTGTCCAAAGTTCACAGAACATTTTAAATCTATTGCGAACCAGATGAGGTTACGGGAACACGTGACCACGCTCCGTTTTTTGTTGTCAGATGAAAGTCTGCAACACAGAGAGGAACTGCGGCAAAGAATTCAGGTGCTACAGAGATTGCGTTATGTGGATTCCAACAGTGCTGTGCAGCTTAAAGGAAGAGTAGCATGCGAGATAAGCAACCACGAACTCATGATTACAGAGCTTGTGTTTGAAAATGCCTTCACGAATTTGCATCCCACGGAAATAGTTGCTTTACTGTCATGCTTTGTTTTCCAGCAGcgccgTTGCAGTGAACCTGAACTAACAAAGACATTAAAGGAGGGCAAGGAGCGCATCTTATCCATGGCTGAGCGGATCGCCTGCCTTCAGTCTGAGTGCGGTCTGATCACATCAGTCGAAGAATTTAAAGAGCAGTACAGGTTTGGTTTGGTTGAGGCAGTGTTTGAGTGGGCGCGCGGGATGCCTTTCGCTGAAATAACAAATCTGACAGACGTACAGGAAGGAATTATTGTTCGATGTATACAGCGATTGGATGAGACGTGCCGTGATGTCAGGAACGCTGCTCGTATCATAGGCGATCCAAGACTTGGCGAGAAAATGGAGGAAGCCTCTGCCATGATCAAACGAGACATCGTTTTTGCTGCGAGTCTTTACACACAGTGAAACCTCGTAGACGAAAGGTGCAACACAATTCAAGCAACCGCAAACTGAAATACGATCGAACGCGGGACAACGATGGCGCTTGCTGGACTTGTGGGAGTGAACTGCGTCAAGCAAAGTTGAGTTAAAGTCAACTCCTAGGAAGGCCGTATCCTGGGAGCCAACAGGGGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
F4JAA5	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08148 all species →	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF21408 all species →	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan
PF17911 all species →	Ski2_N	Ski2 N-terminal region	Domain	Interproscan
PF13234 all species →	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR012961 all species →	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR048392 all species →	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR040801 all species →	Domain	Ski2, N-terminal domain	Interproscan
IPR016438 all species →	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR025696 all species →	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0055087 all species →	Cellular Component	Ski complex	Interproscan
GO:0070478 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12599	SKI2, SKIV2L; antiviral helicase SKI2	EC:5.6.2.6	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068695347.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

7.4Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	2.85	7.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	7.40
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	6.28
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	6.28
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	5.21
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	5.05
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	4.99
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	4.96
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	4.77
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	4.58
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	4.53
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	4.37
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	4.10
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	4.05
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	4.05
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	3.78
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	3.45
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	3.44
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	3.26
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	3.16
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	3.10
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	2.95
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	2.47
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	2.03
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	1.57
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	1.34
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	1.33
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.20
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.00
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.