Gene detail

Detailed information of XP_068696039.1 in Montipora foliosa

Genomic Location: chr1:24351722...24360304
NR annotation: XP_044175832.1, pre-mRNA-splicing factor CWC2-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068839938.1

atggcggctaaAAGAAAGGCTGGAGATCAAAACAGTGAGGAAAATGCATCAACTTTGCTACACAAGCGACAAGAAATGACAACTGCACACGAATATACGACTGCCACTTACTCTAATTCTTCGCTTGTCTCAGAATGGTACGAACAGCGCGGTCAGTGGATAGCTTTGTACGACTGGAATAGTggacattattattatcaaaatcTTGCTGATTATAGAACGCAGTGGGAGAAGCCACCCGAATGGGACTCTATTCACCCGTTATATATTCCGGTAAACCGATATAATTATCATGGATTTGGCGATATGTCAGCAAATAGAGCTGGCACTGGATATGATGTTAATGAGGAAGAGGATAACTATAAACTATCGGCTTCTGACATAGAGGCGAAGGTTGACAGATTTCTAAGACGTCCAGCTCGTCGTCAGATGGATCccgaagaaagcaaaaaaatgcaCTGGATTCCTGAAGGGGCTACAGAGTACAATATTTGGTATGATCGATGGGTGGGAGAACACTGGAGGTCAGACAAAGACCATgGTCCATCAGAGACAAAGTGTTGCCTGGAAACAGATGCTGGTTTTACGAAGGCTAACATATATGAGCCCAGTGGAAACAAGCATTATTACTGCATCTACTTTGCCCGAGGATGCTGTCACTTGGGTGCAGAATGCGGATATTTGCATGTGATACCTACAGATAAGGATGAGAAAAGAATCGATCTTGCTCATGATGTCTTTGGCCGAGAGCGTCATCGTCTTCACAAGGAGGACATGGGAGGGGTGGGTACATTTGATAAAGAATGCAGGACACTGTATGTTGGTGGTCTGGGCCATCGAACCAACCTGGAAAAACTGTTATGGACTGAATTTGGAGAGTGGGGTGAAATTGAGGACTTAAGAGTTATACCAAGGCGTAGCATAGCCTTTGTACGTTACAAGAACAGAGTCAATGCCGAATTTGGCAAGATTGCAATGTCAGACCAAAAGCTGAACAACAGAGAGTTGCTAAATGTCAGATGGGCCTTTGACGACCCGAATCCTAAAGCAAGAAAGgagGAGCTTTTACGAGCTAGACAGAGAGTGCTGGAGGCTGCGTCAGAGCGAGGTTTACTTCAGAAGGCCCTCGTGCGCTCCAGCAAACCCCCAGGGGATCAGGTAACAGGGCCATATCCAAACACAGATCATCAGTACACAGTGGAATGTGGTCCAATGACAAGGGAGCATTTTGAACAGGCCGAGCTGCTTCAGAATGTGTACACGGACTGTACAAGACTGGACGAAGCACTGAAAAGAGGCGAGTTTCTTCAGACCGAGGGAGCAACAGACACAGCTACTCAAACCTCCGAACTTGCTCAAAGCAGTAATGAAAATTCACAAGCGACAGAAAGCGATTTTTGGAACAGCTATTATTACGCAGCTGGGTATGATTATAGCAACTCTTCATGGGAAAATTCTCAATATGCTCAGACAGACGAATCTTACTCCACTACCAGAGACCCATACAGAGAAATTCTTGCGTCTACCGACAAGACAGCCCTTGAAGAAGCTCCCTCCAGCTGACAACCTGTATGAGCCTGCGTTATACGGCCGAGAGCTCCTTACTGGATTCAAGGAGAAGAGAGCGTACGCAACGATGGCGAAAACGCCAAAACAGTTTGCACACAAAAGCCATACGTTTTACGGTATTTATCTCTCGAATATTCTCCAGGACGACTTGCTCTGATGGGCGGAGGTGATATCCCATTCTTGTGACCTTTTTCTCTTGGTAGAGAACCCGTTCTTGTTTTATTCTGTCGCAGCCTTTATTTTGCTGAAAGGACAAAACAGATTAAATAGTTCAACTTTGTTCAGTCTCTAACCAGTAGCTTACTTTTGTGTATTTCGCAAACTTAAACGATGGTGAAAAACATTCGTActtgtattttttgtttacaaaatgcGAAACTCACGGGACAGTTCTTCAATCGACTGAAAATTAAGTCTAAGGACATAAAGGAGGGAAAGACTACACTTTGACTCCCTCTGAACAAAAATACTGAAGAGGACTGTGGTCAACAATTACAATGAAAAAGCTACGACGAATTTCTGTACATGAATAAAATATTCCAAATCAACCAAAGCGACAAAGAGATAAAGGAGAAGGGTTTCTTAAGGTTTTGCTAATAACAAAGCAGCCAGGAT

Protein

Uniprot

Uniprot term	Description
Q54PH5	Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1
Q6T412	Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1
Q5BB35	Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF16131	Torus	Torus domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032297	Domain	Torus domain	Interproscan
IPR039171	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan
IPR034181	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27398	CWC2; pre-mRNA-splicing factor CWC2	-	Spliceosome	ko03041	deepkoala