Gene detail

Detailed information of XP_068697167.1 in Montipora foliosa

Genomic Location: chr1:27026454...27039837
NR annotation: XP_044169065.1, dysbindin-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068841066.1

GGCTCAAGAAAAATATTAGATCCTAATCGATCCCAAAAAGATTGTCCCGAAATCGATGGAAATTGGTTGCAATAAACCGATTCATATTGAGCAAAATTAAAGACTGCTCTATCATTAATAATGTTTGATAATTTTAGAGACCGTTTACAGACAGTACAACATGATTTAAGCATAGGATGGAAATCAATTGCTGATAAAGCAAAAGCAGTCAACAAGAAATTAGTCAGGAAAACGACGTTTATTACAGATGAAATAATTGAGAGTGGTGACCAGTGCTTTAGTTGTGATCTAGAGGCAGGTTCTGCAATACTAAGCAAGTATCGAAAAGAGTGGGCTCAGCTGCATGAAACATCAAGGGAATGTGCAAAAAGGGCTGAGaatGCAGACCAAATTATATCTGAGCTTTCCAAGAAATGTTCCAATCTTCATACAACCATATCCACATTTCACAATGAGCTGGCTCAACTGCCGGATGTCATACAGAGCATTGAGACAGTCAAGGCTGATATAGAGGCTATTGGGGGACAGATGGAAGTACTGGATAACTGCATGGTGGACTTGGAAGAAGTTTGTGAACTTTTGGACTTAGAACGCAGAAAGGCTGCTCAAGAGCGCAAACTGGCAATGTTAAAACACAATCGAGAaGATGACTTTGAGCTTTTGAAAGAGGAACTTGAATcagaaaaggagaagaaagaaGTGAAACTGCAGCAACTTGAGAGGCAAGCATCCATTGAGAAGCAACAGGTGTATGAAGATGCATTCCTGGAGCAAATGAACTACTATATACAGCATGGCAAGACTGAAGAACCAATCACATTGTTGCATGGTAGAAGTACTGGATCTCTGGATGATATAACGTTTGAAGATGATACTGAACTTCATAGAGAGCTGGATAATTTCTTTGGTTCAGGAGCTGAGCCCAATGAAGCACTTTTAGGTGTGGATAAAGAGCAACAAAGTGTTTTCTCATCTGAGGACGAAACAACAGCATCTAGTCATGATCTATCctttgaaaaacagaaaactaTCGGTACCTAGAGATATAATGCTGCAGaaaccTGGATGACTACCTAAATTTCATATATGGATAATAATAGCAGATAATAATTTTAGGATCTAGAAGAATAATATAAAGTCGAATTAAAAGTGACTGATACCTTGAACTGGAAAAGAGTTCAAGGTTTGATATTAAAGActttgaataatattattgtaagcAGCTATGTAAAAGGGAGAATTTCTATTTTAGCTGAGTTACCATTAGACAGAGAATGCCAATAGCTTGACTGAAATGAAGGAGTGGTTAGCTGATCTCAGTATGGTAAAAAAAGTATGTTGTATAtgtgcgattttttttttttaccaattactacgaaaaccaccaatTTATTTTGTGGAATGGGCCTGAATTACCGAGTGactgccccgcccactttcgttaaacattttgatgaaattcctttcccacagGCTttaaggaaacctccactaaaacagcaaaataactttaaaccacggaacataatgtttacaattaaaattgttcaaactttttccaataaAAGCATTTGTATCCAGGAAAAAagtgaataattattaaaaaaacgcttggctttcaaatttcccgggcgctgccatcttgaataattgtgatgtgTGGTGGTTGCCCTATTGAGTGCTCTAAGTACTCTTTGCATCACAACAATTGGGCAACCATGATaggtcacaattattcaagatggtgacgcccaggaaatttgaaagccaaaacaagcgtttttgaaattcattttttttggaTAGAAacactttcattggaaaaagtttgaacaattttaactgtaaacattatgttctgtggtttaaagttatttcctTGCTTTAGTGGAGGTTTCTTATTAAGGTGTACTATAATGACtgcaacaatggaaaaacaagttttcaaaatatatCTGTTTTTCTTGGCAATTGCTGAAAAACGTCCCATGAAGAAACCTGTGGTGAAGTCTCCCCCTTTTCCGATAGTGTCTTGTATAGTCTTCATTCTCAAGTCTCCTCCCAGAGCTTTTCCACAATTATAGAGCCTTCCATATGTGCCAATACCTcttaagaatttgaactattaCGAGCGAAAGTGGACAGAGCAAAGACACAAAAATTCCCACCCATTCCACAGattggtggttttcgtagtatgtGAATGTGCATATGAGGATGTTGGTTAGTGTCATTGTCTTAATTTTGATCCCCTCAAGCCTATTTATGTTTAATGCTGTAGTATGGAAATACTTGATTTTAAGTTATTGGCTGCTGGTAATGTTGCCCACTGATCATTGTTAGTACtgcatagacctctttcataatggcagtcaaataaaatattattttgttttcatgctaaaaagcctttctagcctcactACAGTGTGCATATTTCAAAAgattatttgtttcaaaatgagggcagtaggtctattTAACatgaatacaaaagaatgtaaaggaggttgccatttatgaaagtggtatATTTGCAGGAAACCTCACCACAACCTTACATTTTAAATTTAAGACATGTGCGAACAAAAGACGCAAGGTATTTTAATTATAATTACGGCTATACCATGATGTTATTGTTAATCAATTTCAAAAATATGTCAACCTTAAAGACGAATGGTCTAAAATGTTTTGCTGCAAGGATATCTTTCAAAAATTCCATAACTTCGTCATATCTTAATGGACCTTGCCATTTCAGGCCATGTGATGTTCCCAAAGGaactttccttttatttttttataagttatgcatacatatgcacatgcacaagacgacatttgaaagaaactgatCCCTGGAGTAACAACACATGGTctaaaatgggaaaaaatgtaGAGATTAAAGAGGTCCATTGTTAGCCACCGATTGTAATAAAATTTAAcaaggaaaaaactttgtattaATATCTTGTGCCCTCAACCAAAACATACTGGCAGCTTATAAGCGCACTGTACATTTCCCCATTAATCAAGTCTTCTTTATTTTCGTTGTGCCTCACTTACTATTTTCCACTTTCCCTTCACCTTGACCAAGCGTTTTTTATTGTgcttcagacggaaatcggtggtattaatactggttaaaattacacaatttattgtcttgataatgcgtacgtacgtgcttggcattgctggacaagtataaataaatccttttttaag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZWE6	Dysbindin-A OS=Danio rerio OX=7955 GN=dtnbp1a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007694 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_068697167.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007531 all species →	Family	Dysbindin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16294 all species →	DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20189	DTNBP1, BLOC1S8; dysbindin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068697167.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

66.7Max TPM

33.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	33.51	66.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	66.66
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	66.37
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	65.21
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	65.05
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	62.46
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	62.15
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	58.32
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	55.31
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	51.46
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	48.29
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	44.05
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	43.57
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	42.65
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	42.02
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	41.77
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	41.39
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	40.07
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	39.74
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	39.47
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	35.00
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	33.09
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	32.96
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	32.94
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	30.64
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	22.79
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	18.04
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	12.60
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	12.41
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.