Genomic Location: chr1:27261563...27291534
NR annotation: CAH3027836.1, unnamed protein product [Porites evermanni]
| CDS | |||||
| LOC137995624 | |||||
| Transcript |
| rna-XM_068841153.1 |
| Protein |
| XP_068697254.1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| A0JMQ0 | Ribosome biogenesis protein bop1 OS=Danio rerio OX=7955 GN=bop1 PE=2 SV=1 | ||||
| A4IHS2 | Ribosome biogenesis protein bop1 OS=Xenopus tropicalis OX=8364 GN=bop1 PE=2 SV=1 | ||||
| Q562C2 | Ribosome biogenesis protein BOP1 OS=Rattus norvegicus OX=10116 GN=Bop1 PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08145 | BOP1NT | BOP1NT (NUC169) domain | Domain | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012953 | Domain | BOP1, N-terminal domain | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR028598 | Family | WD repeat BOP1/Erb1 | Interproscan |
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17605 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006364 | Biological Process | rRNA processing | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0042254 | Biological Process | ribosome biogenesis | Interproscan |
| GO:0000463 | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0030687 | Cellular Component | preribosome, large subunit precursor | Interproscan |
| GO:0043021 | Molecular Function | ribonucleoprotein complex binding | Interproscan |
| GO:0070545 | Cellular Component | PeBoW complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14824 | ERB1, BOP1; ribosome biogenesis protein ERB1 | - | Ribosome biogenesis | ko03009 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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