Gene detail

Detailed information of XP_068697903.1 in Montipora foliosa

Genomic Location: chr3:1215807...1229004
NR annotation: XP_029208739.2, non-POU domain-containing octamer-binding protein-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068841802.1

TCACCACGTGGTATATTAAGCAAAGCGTGGACGCCATTTTATTCAGGTAGTTTCTCTTGTTTTGCGAATTATTTGCCATGCCGGCCTCTCGCTCTCGTTCTAAATCACCAAGACGGTCTTCCTCATCGTCTTATTCAAAAGATAAGTCTGCCAAACCGAACTCTCGAGAGTTAATCACAATAAAAACAGAGAAAGAAGACTTCGATGAGAAGAAAAGCGCTAGTTCTTCAAGCAACAATGCTACGAACTCCTCCAGACCGAAAACTTACTCTTCAAGTGAAAAGGATGAAAAATCTGGAGAAAAAACGTATCGGAAACCTTCCGAGTCACCTGCGTCGAAAGGTTCTACTAACTGGAATTCATCAAGCACCAGacctaaagaaagaaaatttactGGTAGATGCCGACTCTTTGTCGGAAATTTGGTCAGCTGTGATGAAGCAGAGCTGAAGGGAATGTTTGAAAAGTACGGCGAAGTAGCCGAAACTTTTGTCAATAATGACAAGGGATTCGGTTTCGTCAGATTGGATACACGTCTCAATGCCGAAGCAGCCAAGCAAGGAGTTGACGGGACGTTTCGTATGGGAAGAACTTTAAGAGTACGTTTTGCAACACATGCATCAGCCTTGAAAGTGGTTAATCTTAACCCAATGGTCACAAATGAACTCTTGCATCAAGCATTCTCGCAATTTGGTGATGTGGAAAGAGCAGTGGTGGTCTGTGATGACAGGGGAAGATCAAAAGGATATGGAATTGTTGAGTTTTCAAGGAAGAACAATGCTCAAACAGCAGTACAGCAAGTCAATGAAGGCCTGTTCCTTCTTGGAAGGACTCCTTGTCCAGTGTCAGTGAAACAGGTGGAACATGAAGAAGATGAGGATGGAATCTCAGATGAAAACCTCAAAAGAAATCCTGATTTTCAAAAGGAAAGGGAATGTGCTCCACATTTTGTTGCACCAAACACATTTGAGGCAGATTGGGCTCAGAGGTGGCGTGCACTTGAAGAGGTCGAAGTTTCCCAGAAAGAAGCATTAGACATTCAGTTTAAGGAGGCTCGGGACAAGTTAGAATCCGAAATGGCACAGGCCATCCAGGAACATGAAACCATGCTCATGAGACAAGAGCTCCAGCGCCGCCAAGATGAACTGCATCGAATGGAAGAAAAGCGCCAAAGAGATGAGATTATGAGGCAAGCAGAAATGAGGAGGCAAGAAGAAAGGCGTTTGCAAGAGGAATTAAGGCGCAGAGAAGAAGAACTGCGTCACAAAGAGGAGCTATTTAGACAGCAACAGCATGAGCTCCAGAGGCATCGACAGGAGGATATGATGTGGCAGGAATCTATGCAAAGAATGGATTCCAAGTTTTCCTCAGGAATGCCCCCTAAGGGACCTTCTGGCGGAATGGGTGGTGGAATGGACTGGGAAATGGGCTATGGTGGGCCAGGGCGTGGTGGACCAGGACCTGGTATGCGTCCCCCTGGCATGATGAATCCGCCTCGAATGGGACCAGGTTCAGGAATGATGCCTTTCCGGGGACACCCGCCGATGGGTGGTCCACGACTTGGGGGCCCTCGAGGACCACCAGTAGGACCTGGCATGAGACCCACCTTGAGACCAagatttgaaaataaaagggagTATAGCCGTGAAAGGGTAGACGAAGATCGGCTTGCTGCCCGCTCCCGACAACCACCAGGAAGAGAACATGGTGATGCCAAGAGGTTCCGTCACTGAGCATAGAATAGCATATAAACTTGCAATGTTGCTCCCATGTCTGCCTGTTACCTTGAGAGAACCAAAAAGTCTCTTATTATGACACGGACTTGTATGCTGTACATAAACCAGCAAGAATCACTCGTTACAGAAGAATTCTTGTTTGTGCAACTTCACATACTTTGTCTATTAAGTTAGTGACCTAAGGGTATCAACACTCGTATAGTTTTTGTAGGGACTAGTTTGATTTTATCACTGTAGTTTTAATTGTTTGTTAAGCTGAGggaattttctttaattgagGAAAGCATGATCACAACTCAAAACTGTTTTCATTGAATtgattattaataatattctaTAATGCTGTTTTTTGAATAGTTTCCCTTTTAATCCCATTTGTTTATCTGTATGAAAGGCtgaatttctttcaataaatattgttttagtacTTAAAAA

Protein

Uniprot

Uniprot term	Description
Q5ZK88	Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE=2 SV=1
Q4KLH4	Paraspeckle component 1 OS=Rattus norvegicus OX=10116 GN=Pspc1 PE=1 SV=1
Q8WXF1	Paraspeckle component 1 OS=Homo sapiens OX=9606 GN=PSPC1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08075	NOPS	NOPS (NUC059) domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012975	Domain	NOPS	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13219	SFPQ, PSF; splicing factor, proline- and glutamine-rich	-	Spliceosome	ko03041	deepkoala