Gene detail

Detailed information of XP_068699596.1 in Montipora foliosa

Genomic Location: chr3:44191737...44199642
NR annotation: XP_029183240.1, tetratricopeptide repeat protein 17-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008669 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_068699596.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052630 all species →	Family	Tetratricopeptide repeat protein 17	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16091 all species →	TTC17 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24931	TTC17; tetratricopeptide repeat protein 17	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068699596.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

153.0Max TPM

43.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	43.08	152.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	152.96
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	83.51
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	62.03
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	59.13
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	58.65
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	57.73
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	57.51
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	57.45
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	57.34
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	57.33
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	55.77
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	55.61
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	55.47
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	55.13
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	52.85
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	51.55
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	50.23
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	48.89
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	43.86
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	43.34
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	41.65
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	40.40
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	40.38
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	39.30
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	38.96
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	38.77
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	38.23
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	31.97
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	24.84
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.