Genomic Location: chr3:53378917...53410283
NR annotation: XP_044176412.1, rootletin-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families
| UniProt accession | Description |
|---|
| Q5TZA2 | Rootletin OS=Homo sapiens OX=9606 GN=CROCC PE=1 SV=2 |
| Q8CJ40 | Rootletin OS=Mus musculus OX=10090 GN=Crocc PE=1 SV=2 |
| Q60952 | Centrosome-associated protein CEP250 OS=Mus musculus OX=10090 GN=Cep250 PE=1 SV=4 |
| Family type | Membership / link |
|---|
| Orthogroup (gene family) | OG0002685 (this species only) |
No InterPro signature was detected for XP_068699909.1. This gene does have a gene model — the search simply returned no hit.
No Gene Ontology signature was detected for XP_068699909.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the
Functional Domain Search page, which searches all 148 annotated genomes at once.
No KEGG orthology assignment for XP_068699909.1.
Searching by KO or pathway ID across
all species is available on the
KEGG Pathway page.
Expression pattern (RNA-seq)
Transcript abundance of XP_068699909.1 across
36 RNA-seq samples of Montipora foliosa.
Values are TPM (transcripts per million) from the StringTie quantification; one bar is one
sample, grouped and coloured by condition, sorted by expression within each group.
36Samples
29TPM > 0
1Conditions
31.8Max TPM
14.2Mean TPM
By condition
| Condition | Samples | TPM > 0 |
Mean TPM | Max TPM | Mean, relative to max |
| Polyps |
36 |
29 |
14.19 |
31.75 |
|
Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
