Gene detail

Detailed information of XP_068700667.1 in Montipora foliosa

Genomic Location: chr3:70388503...70396810
NR annotation: XP_029187088.2, GTP-binding protein YPT1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068844566.1

aaaattaatgtaaattattaatataaacaaaaatggcggcgaACTTTGATTATATCTTCAAGGTCCTTGTGTTGGGGGATAGTTCAGTCGGAAAGTCAAGTCTTATCAGACGATTTCACGCTgatgtttttgaacaaaaacttcCCACGACTATAGGTGTTGATTTCTTCGTTCACGACTTTGAAGTAGATGGCAAGAAAGTGAAGCTTCAAATTTGGGACACAGCAGGAGAAGAGAGATACCGCCAGGGTGGATTGACCAGCTCATTCTATAGAGGAGCACATGGGGCACTCATTGTGTTTTCACTAACATCACATAAGTCatttgaaaatgttaaaaaactcTGGATTGATGAATTTTACAGGAAGAGTGGTTCAGATACAGTTACCATATTAGTTGGAAACAAGCAAGACTTAGAAGATAAAAGAGAAGTCAAGGAGGATCACATAAAAGAATTTGCAGAATTGAACTCCATGTGTTGGTTGGAAACTAGTGCCAAGGACTGTACCAACGTGAAAGAAGCTTTCGACACCATGGTCTACAAACTTTGCGAGAGTCATGAACAATATCTTTCATTTCAGTCAGAGCCCAGTAGTCCTACCAGTTTCACACTCCATGGTGCTTATGGTATATCAGATCAACAGCAGTCAAGTGGATTAGGGTACTGTTGTAACTCAACATGATTTGCAGTGAATTTAAAATGGCCACATCAAAAACAGAATAAATTTCTAACTAAAGGTAGTGGACACTGCAATACGTAAAGGTTCATTTAGTAAACCGATTAATGGTGAatactaaatattttaattttccacccaaagcattattattattggttagCTGTTCAATCAGATAATCATTATTGCCTTTTACAAAGTTTCTCTGCCAAAAGGGGGTTATTTGTCATTATTTTTGTAATGATGGGTATTAGAACAAATCAACAAATCAGGATTTGAAGGCCAGCTTCGTAGGAAATAGTCGTATTGCATTTTGTAAAGTATAGttccttaatttaattaaagtgccactgtgaccaaaaactcaattcttatttttctttataacatagtaaaaggtaaaactgttaaaatgtttgactaaacgTTTTCGATCTTGCGATCATCTTCAGAGTGTTTAACTTattaaacactaagcgaccaaagttttaagccttgatttcaaagacaCCTGACTAGCACGTGATATAGATTTATTTTATCtagaattttcttatttaatggtccaccattactaactttaagatcttgagagagcttgatcaaggagaaaatggtGTCaagggctcactagtttaagaatgcaatgcgtgtgtatgccTCAGAATTAGAAGCAGCACGAGAGTTTTGGGTTTCACACATTTAAATTAGTGTTTTGCATATTtttaataagctgcattcaaacGCTGAAATTGttagctagtgagtaaatgacgtcacttttcccggatccaaccctctgaggtccagtcagTCAGTTAAATGAATGAGAGTACTGGCAGACTGTGAAAGCCAAAACTCACACTTGATGTAAATGGCTTTTTGGATTAAAGTAGACACTCAAaaatttgccagtcaggtgttatgcaaacactttcaaaatcttaagaaaaaaaggaagtgggttttttttatcacaggggcactttaagaaaatGGGACTACATCATTTTTTCTGATGCTGGGCATTGGCAGGTGTAATGAATTCACAAGTTCAAATCATGTAGATTACCCCATATTAACTATACTTTTTCTCATTCTTGTGTGAAATATCATCCAGTTTTAAGTATATTTTGTGACATTCAGATCACCAAATCAAGCTTTCTTACCCATGTAAAGTGATGTTGTATCTAAACATATTTTctgattaattttttgtttttaatttgccAAACCATGCAGAATGTCATTTTCCTATACAATAATATTGAAATCTTTTGTAAGGTCATGTTTGCACATAAGCCCCAACAAATAATATTGTTGCTGCATAATTTAAAGCCCACAACGACAGCCATCCTATTTTAAAGTTCCTGATTACCCTGTGACAAGAAATGTTAAATGACAACCATCTTTACATGTTGTAAAAACTGACACAAAAATTGTACCATACTTTTACAAGTAACTTTATTGAAGACTTCAGgttttacaacaaaataaattaatgacTTACTATTATTACAACGTGTACACCCTTTTACTTACTGGTTCTCATTATATTTTTTCTTCTACtcttgtaaaataattttagaaaaaaagcaATAAATAATCCATTCCAAAGTTTCA

Protein

Uniprot

Uniprot term	Description
P01123	GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPT1 PE=1 SV=2
P11620	GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ypt1 PE=1 SV=2
Q2HJH2	Ras-related protein Rab-1B OS=Bos taurus OX=9913 GN=RAB1B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan