Gene detail

Detailed information of XP_068701663.1 in Montipora foliosa

Genomic Location: chr4:7947821...7961629
NR annotation: XP_015778034.1, PREDICTED: TNF receptor-associated factor 4-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068845562.1

CGAGAGAACATGGCGGAAGTGGAAAGGAGTTGTGCACTCGGCGGATACGATGAAGAGTTTGTGGAAGATATAGAAGACGATTGGCTGTGTCCAATTTGTCATCTGCCATTAAAAGTGTCGGTTCTAACCGAAGTATGCGGACACAGATTCTGCAAACTTTGCCTTGAAAGACACTTCATGAGGCAGGAGGCCGATGGACAAGAGCTGACTTGTCCTCTGGACCAAAACATCCTGACACGAGACAAAgatATGTTCGTAGACAAAGCAACCGAAAGAAAGGTTCGTTCGTTTGTTATCAAGTGTCAAAGAGGTTGTCAATGGACTGGCGAACTAAGATCAAAAGAGGATCACGAGAATGATTGTAAAAGATTTCCAGTGAACTGTCCAAATGGTTGTGGAGAACTCGTCCCAAGAGAGGagATTTTATTGCATACTGAGGATAACTGTTCTCTGGCACCAATTCCCTGCCCCTATGCTGGAATGGGCTGCAGCAAAAAGGTTCCTGAACCTGAAATTAAATCTCATCTTCACTCGGAAATGGGAAATCATCTTGACTTGGTCTGTGCAAAGTTGAGGAGCACTGAGGAAGAGTTGCGAGAAACCATTGACTTGGCCTGTACAAAGTTGACGAACACAGAAGAAGAGTTGCGAAATACTAAAGAGCACCTTGACGTGGCCTGTACAAAGTTGAAGAACACAGAAGAAGAGTTGCAAAATACTAAAGAACAGTTCAAGGAGATCACGAAGGAACTGCACGAGAGGATCGGTGCTCTTGAAGATAAGCCTTACCAGGAACCCATTCACACATACACGTGGAAGATTAATGGCTTCCATAGAATCTTAGAACAAGCTAAAACGGGAAACGTAGATAAGATAGAAAGTGATTCATTTTATACCAGTGAAGGTGGCTATAAAGTAAAATTGCGTTTGTATCCGAATGGTTACTCTGCAGGGAAAAACACTCATTTGTCGATTTACCTGAAGATAATGAAAGGCGGCTTTGACcccattttaaaatggcctTTTGCTAAACGAGTCACTTTAACATTAATCGATCAACAAGAAAATGCAAATGACAGAGAAAATATCACCGCCACCATCTCAGGAAACCAGAAACAACAAACTTGGAACTCGAGGCCCCTTGGAGAATATGGCGTTTGGAATGGATTTTCTAATTTCGTATTACATGATGTACTAATGAAGCGGGGTTATGTTCAGGACGACACCATCTTCATACAAGCTAAATGCGACACTCTTGCTCCGTGAAaatagaaacaaacaaacaaacgaccaCACATAACTTACGCCATCAAAGCTAaatctacaatcctggacaaacaTAGTTGacactttttttaaattttagaagTTTTGGACCATACCTTGTACAAAACGACCACAGTGCTGcctcccctcccccaccccgCCAAAAACAATGTTCTGCAAGAAGTGCAGTTCACCCAGTTGTGTCTCAACACTGTTTTTTAGGGAAGGGCAAGCCGTTAATAagattttcatttgaaaaaaggtttttGCAGATATGGCCCGGCAAGAAATGAAAATGCCTAAGCAATTCAGTCCATGATAGACGTTTCTTTTTAACCTTTTCGCCCCTAAGGGGTTCCCCAATGAAAGCTAAAAGCACCCTGCATTAGACAGCAAAATCTAGTATAAGTGTAACACTTAAGAGGCAAAGGGTAAAGGAGTTTTGAGTGGACGTAGACGTTTTCAACCATTTCGCCCCTAAGGTGTCTCATTGACAAgtaagtaaaatcgtctgaagTTAGAGTTAGACAAAATAAAATCTTAATATAGACTTAATATTATCCCAGAAAAGATGGGTCTACGTAGCCGTAGCTTTTTTTCTCGCCTGGTGTTTTTTGCGGCTTTTTCGTGGACGTGAAATTGGAATCTAAATTGAATTGCAAAACCAATTTCTGAAGCACTCGTCGTATAGGCTTGGAAATCTCAGTTCTTCTAACTTTTTTCTTGTTCTACTTATTCCCAAATGCAATTTAAAGGAGCTGATTTCGGCACTTAAGTTTTGTCAGAGTAAAATATTGCACTACCAGCAACCGCCTACTTCAATAACATTTAAGTGACGAATACAAATTTATTGAAAAGATTTAGCATCGTGCAGTAAACGGGAAACTTGCGCCTTttaccaaaaatcaaagaaacttgtttgattttaacTCATGTTTTGCCTGTGTAGTGCATTGCGGAACTATGTTACCGAGAGGGCAACGCGTTAAGGGATTGATTGTAGTCCTCGAGTGTGAAGGAGAAAGAGACAAGttaagagaattttcatgcaTTTATGACAAGAAATAGTCTGCCGTTTTCCGGTTTAAAGTTTCACTTAAACTctatgctaaatctctctattaacTTTTAGTATGAATTGCATGACATCATTACATTTCTAACATGTTTGGCTGTAACACTTGTTATATGAAACTctgctttaaggacggtgcctactaattaaagatatttttgccccagtgtgccattatgcaggaaatgtagatcttaacaagtgttattgaaatccaaaaagaaaattgggggtaaccacgcatttttcaaagataattcatgaacaatatttgtgtaaagctctaaaatacaaagcaatgtatggcgttctttcttaaattgaagcttaattatctctcaaaaatgcatggttacccccaattttctttttggataccaagagcacttacaaAGATGTACTTTCTGCGGATAgtttaaaaccgcgcaaaaatatccctgtattagtgagcatcaccgataggaaatccgagtatctcgagatgcgcagaacgtatgcgcaataacaatactaggcaccgtccttaatagttaccattcactcttcATTTCTGGTGTTTGGACCATCACGCATGGCCTTCAATCTCTGTCTCTTGCTGGTGACAACTTTTGGAACTTTCTTCGAAGAAAGAAGTCAAATAATTACCTGCGAAACACCATTTCTAACTTTGAAATCAGTAATGACTGCTGCACTTTTTGAAATGATTAACTTTTATATTTTACATTAGGTATCCTTGCTTTCTTTTATTACCGTATTCGTACaattagtagggagcttaagcacacgcgtttttgagacgcggacggcaaccggaagtgagctgttttccgttttaacttgtcttcacacaaccacacttACAtggctaagtatcttttctccgttagagacgattggtataaaaatctgggagacactactgtcctgaGACGTGAAATGTTgtcttccggttgctgtccgtgCCTCAAAAACTCCCTAGTAGCTTTCCAAGAACCTGCAACTCCAATACTgggtctatgtaacggcattttcacggatcaagctatttttagatgaGTTTGGCATGCACGAGTGGcaattctcaatcccatgggtaataatgtttcatgcaagacttgtgatcgGCTGGAAAGATCTGGTGTcttgggaaaatcaatctaaaaataactcggtcttcAGAAACGCAGTTCCACAAGTTGAGTGAAGTTGTACtttcctagtcatgggctcctggtttttCTCAATACTTGTATTATATGAAATTATGATGTATATTTAAAGTGCGAGTTTTAGataaaagagagaagtgatcgtCGCACTTATTTGAacaatttaaagtgcccctgtgatcaaaaaaaccacttccttttttccttcagattttgaaagtgtgtttgcttaacacctgactggcaaaattttgagctttgatttttatccaaaggccgtttactttgagtgtaagttttggatttcacggtccgccattactcacgttcaaaactgaccgattggacctcagacggttggaacCAGgcaaaagtgacgtcagaggctcaatagcttaaaatttcagcgtgtgaacgcagcttattatatatgcaaagcgtgagtttaaaagtgtgaaagcccaaaacccccgtgctgcatattaattctgcggcgtacacacgtattgcattcttgaactggtgagcctttgacgtcattttctcctcgatccagctctctcaagaacataatgttagtaatggcggaccattaaataggaaaattacagttaaaataaagacgtgtctttttgaaatcaaggcttaaaacgtgggtcacttagtgttttgttaacatagttttgaaatccaaagaaaaatatgaattgattttttagtcacaggggcactttaatttcACTTCAATTTTACTAAGACACACCTAAAAATTTccaacatgatctcttctctaaattaacgattatcgttaattcttaatttgctttcaatttactattatagttaatttaggacactgtatcccaggacttgtggtagcagagaaaataaggaagtaaaaaaaaatcatatccgtggattggattcGAACCTGGAGCTTCTACTCCAttggaaccgcttctttccgcttcaccactgaagatcaataCAACGcgttttcaaaaaaacattttttagaGTCtgccatagaatatcgctgctgaatAAAATATTAGGCCTAGGCTAGGTTAATAATTTAAGCCTAAGCTTGGATTTAAAATGTTTaactttgtcgtgaagtttggaaagcGACCTTTGCAGAgtgtaatattgtttgttgtcgTTCTTTTCAGCATTTGCCTTCTCTTTCGAGGCCGTCGATATCCTATCGATATTACAAATTCCACATTCTGAGAAGGTCGAGCACCCTCCCATTTTATTTTGGCTCTCTCACGAACAAGGTTGAAAGTTTTTTACGTGACTAAATGTCTCGAATTGTGGCTTTCGGTGTTCGCGGTATCGTTAAAACTGAAAATCCCATTAGAGCTAAAATTTTGCCCATTGTGACCGTTGCACCAATGACGTTTTGCAATGAATGGTCGGAAGCGCGCGCGCATTACTtttccatccatccatc

Protein

Uniprot

Gene family

Uniprot term	Description
Q61382	TNF receptor-associated factor 4 OS=Mus musculus OX=10090 GN=Traf4 PE=1 SV=2
Q9BUZ4	TNF receptor-associated factor 4 OS=Homo sapiens OX=9606 GN=TRAF4 PE=1 SV=1
Q54FC5	TNF receptor-associated factor family protein DDB_G0290965 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290965 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR012227	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan