Gene detail

Detailed information of XP_068703166.1 in Montipora foliosa

Genomic Location: chr4:29819287...29831913
NR annotation: XP_029206271.2, lipoyl synthase, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068847065.1

TGGAAGCATCACGCgacgttttcaaaatggcgactaGTTGGAAGGTACCTTCAAGATGCTTTTCATCCGTAAACAAAACGCTTATGAACCGTCCACTGAGTTGTGCAGTGCGTTGGATGAGTGCGGCTTTGCCTTCAGACAAGAAAGCGTTTATAGCAGAGGGACCAAGTCTTGGAGAATTTATATCAGGAGAAGTCAGTCCAGACGAAAACCCTTACAAAAGAAAGAAGGGGCGACGgtTACGATTACCACCGTGGCTCAAGACAGAGATTCCTATTGGCAAGAATTATACCAAACTCAAGGAAACACTCAGAGAGCTGAACCTATCCACTgTGTGTGAAGAAGCCAAATGCCCCAATATAGGAGAATGCTGGGGTGGAGGAGAGCATGAAACTGCTACAGCTACCATCATGattcTTGGTGACCAATGTACAAGGGGTTGCAGATTTTGCTCTGTCAAAACAAACAAGAGACCGCCTCCCCCTGACCCAAATGAACCAGCTAACACTGCCGAGGCCATCAGACGCTGGGGTTTGGATTACATAGTCATCACTTCTGTTGATAGAGACGATTTACCTGATGGTGGAGCAGGTCATTTTGCTGAGACAGTAACAGAAATAAAAAGGAGAAGTCCCAGTATACTTGTTGAATGTCTGACTGGTGATTTCCGAGGTGATCTTACAGGTGTGGATGCTATTGTCAAATCAGGACTGGATGTGTACGCTCACAACGTGGAGACAGTTGATAGACTTCAGTTACTTGTTCGTGATCCAAGAGCAAACTACCAACAATCACTAGAAGTGCTTCGACATGTAAAAAGAATCCAACCCAAGATGATAACTAAGAGTTCTTTGATGCTGGGACTTGGCGAAAAGGATGAAGAAGTCCTGCAAGCGTTAAAAGATCTCCGTGACGCCAACGTAGATTGTATGACATTAGGACAGTACATGCAACCAACGAGACTCCATCTCAAGGTTACGGAGTATATAACTCCTGAAAAGTTTAAACATTGGGAGACTGTTGGAAATGAACTCGGCTTTGCTTACACGGCTAGCGGACCGCTCGTTCGTTCGTCGTACAAAGCCGGGGAATTCTTCTTGACAAACTTATTAAAAGCTCGGAGTGGAAGCGAGGCAAGGGATGTATGAAAGCTGGAAATAGTAGCGATTAATGTGGTGGAGCAACAACCAGTTGCGAAATTCTTGGAACATTCTGAATGAACAACAACTCTTTATCACTTGAAATCGCTGCTAGTTACAACTTGGGAAGTACAGTTCCCTTCAAGCTTTTCGTTCAAACAGTCGGGACATTCTTTGGtataatctttcttttttttttttcatagttgAGTGAGGAGAAGTGGAAAGCCAAAGATCTTGAAGAACTAATGAAAAAGTCAAATTAGGTTCAGTAAGGCAAGATCATGTCGACCTTATTGTGTCTGCTGGTTGGCATGCGCCCGCGATTTCAATAAATCGTGCGAAAGCTGTTTAGGATAGATAACGAGCAGTCCATCCTTCGCCGCTTAGTTAGTCGAGCGCGAGATAGGcacgagaaaaaatggccaGCCGTGCGAAATGTGGAGCGGGGCCATTTTTGCTCGACTAACGAAGTGACGAAAGAGGAATTGCTCGTAGTCTATGTTTAGAAAGTTTGCCTGTCCTGGAAAGGACAGGCAAACTTTCTAAACATAGACTACTGAACAGCTGAAGGGAAACGAAAACAGGTTTAACGTTTTTGCAATTCTTGCCTCGAGGCGTTTTGTCCCGTTCCCAACACATGGAATTACACGTTTTTTGTAAATACTCAATTACCAATGGCTTCACAAGATGGCGACTGTTTGCTTGGAATGAAATCAATTGAATCTATTTTTACTGCATTCATAactcaatttgaaaaaaaagtaatacAAGTAATTCAGCCACCAGTGGGAAAGGATACCCTGAGGAGGGATTGTAGAAAGGAACAATCAAGCTAATCCTTCCGTTattaattaaattgtttttcGGACACTGAA

Protein

Uniprot

Uniprot term	Description
Q5BIP7	Lipoyl synthase, mitochondrial OS=Bos taurus OX=9913 GN=LIAS PE=2 SV=1
O43766	Lipoyl synthase, mitochondrial OS=Homo sapiens OX=9606 GN=LIAS PE=1 SV=3
Q5XIH4	Lipoyl synthase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Lias PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16881	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003698	Family	Lipoyl synthase	Interproscan
IPR031691	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009107	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03644	lipA, LIAS, LIP1, LIP5; lipoyl synthase	EC:2.8.1.8	Lipoic acid metabolism	ko00785	deepkoala