Gene detail

Detailed information of XP_068704841.1 in Montipora foliosa

Genomic Location: chr1:58708491...58712667
NR annotation: XP_029186987.1, group XIIA secretory phospholipase A2-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPR2	Group XIIA secretory phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g12a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008330 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06951 all species →	PLA2G12	Group XII secretory phospholipase A2 precursor (PLA2G12)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010711 all species →	Family	Group XII secretory phospholipase A2 precursor	Interproscan
IPR036444 all species →	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR033113 all species →	Active_site	Phospholipase A2, histidine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12824 all species →	GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482 all species →	Biological Process	arachidonate secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01047	PLA2G, SPLA2; secretory phospholipase A2	EC:3.1.1.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068704841.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

80.6Max TPM

35.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	35.45	80.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	80.65
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	72.60
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	65.34
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	59.53
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	54.31
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	53.25
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	53.03
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	52.10
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	51.78
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	51.20
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	50.79
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	50.77
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	49.63
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	48.16
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	46.22
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	45.99
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	45.38
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	44.84
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	44.62
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	44.32
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	43.56
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	40.71
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	40.51
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	27.27
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	24.50
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	23.75
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	8.50
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	2.98
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.