Gene detail

Detailed information of XP_068706880.1 in Montipora foliosa

Genomic Location: chr5:43836656...43855372
NR annotation: XP_015757874.1, PREDICTED: uncharacterized protein LOC107337224 isoform X8 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068850779.1

CAATGTTCACCTGTTTTTAATCAACAATGAGTTATTTATCGTTTGTGATTATGTTCGTTCTTTCTTCTTTTACGACTTATAAAGCTTGTGTGATCGTTCCACAACCCGTTGTCTTGTTCCCTCTTAATGCCACGTATGGTACAAGCGACATCAAGAACCGTACAGCCCCTGGGATCCCTCATGGGGTTAGTCTAGCTCCATGTCCCCATGGAAAGGAAAGCGGCTCGTATGAATTCTTCGGAAATTCAAACAGCTACATCGAGTTTCCCAACAGCCCAGGGGGAGCATTAGATGTACGATACTCCATGACAATGCTTTGCTGGCTGTATTATGACCCTCAAGGTGGACCACAAGGACCTATCTTCAACTACAAAATTGGCAGTGCCCAATATGGAGTCCATCTTTGGGTATTCGACAAGGAATTGTTCGCAAGGTTCAACAGTCGTGATTTCACCGAGCAAGCTTATTTCAAGCACACCTCCTTAGTAGGTGGATGGAAGTTCGTTGGTGCGTCCTATGACAATAACACTGGTGAAATAAAGGTGTGGGTTGATGGAGCTCTGGTAACATCAGGAAATATAGGAGCTGGTGTGGAACTAGGGACACAAGAAAATGTCAGAATGGGAGCGAGGCTGAATGGCCAACGATGTTTTAAAGGCAGGATCGCCCAGATGCAAATATACGATGTAGCATTATCCCAAGATCAAATAATGGAACTACTGAAACAACCTGAGGAACCGTGTCGCTATATGGAATTCAAATCCGATGGTGCCTTTCAAAGCAGGCGACTGGTGAGTCATGTGATCCGTACAATTGAAAACATCGAAGGGGATTTTTGCGAAGCCCTCTGTTACATGGAAGACAACTGTGTCAGTTTCAATATGAAGATCATAGGCGAACCAGGCGCATCATCAACAACTTGTGAACTCAACAATTCCACTCACTACGGACATCCGGGCGACCTGCAGATATGGGAGGATTATTTTTACCATGGAATAATGGCAAATCCTTGCGATCAGCGTCTTTGTCAAAACAATTCAACCTGTCAGGCAGGATTCTCCGAGAGAGGTTACCGATGTTTGTGTGGCTCTGGATTTTGTGGTGAACACTGTGAAACTGATATTGACGAGTGTTCCGCAAGACAAGCGGAGTGCAGCGCTAATGCTGTGTGTCACAATCTCCAAGGATCGTACAGTTGCTCTTGTAAACAAGGATATTACGGTGATGGGAAAAATTGTACAGCTGCAAATTCATGTTCACTGGTTAAAGCGATAACAGGCGAAGGAGCGACCAACGGCGACTACTGGCTACTTCAAGATGGCGTCAAGTTTAAGgtTTACTGTCATATGGAATCGGGAGATCAATCCTGGACTATCATCGCTCGATTTTCAAACAATGACTTTCGTGAATGGATGCGGGCGTTCGGCCAATGGTGGTTTACAAAAATACACGGGACTGGAGCAACAGGGCAAACATCACCCAATGACGATATGATCTCGCCAGCATTCTGGTTGGTCAGTGGTAAGGAATTCAAGATCACGCGCAGTGATGATCCGCATCATGTCGCTCTGTTGCGGACAACTGGTGACTGTTTGGGTGGAGAGACATTCCGGGCGAAAATAACTAGTTATGGTACCTTTACCGATGAGAGCAGTTGGGAAACTCAACAAAACGCTGATGGCTGCAGAGGAAGTTGCAATGTTTCTTACGGTGGACGCTATGAAGAAACTGCCGGTTTTCGACAAGCGAATTGCAGTGGTCGAGTTCAGAGCGCCGAAAAGATCAGCTTCTGGTGTGCGATTGAATCCAGTGGCTCCGTGATGATGATTGGTGGAGGAGGAGAGCCTTGTACGTTGGGGGATCATGGGATTGGCATAATATCGTCAACAATGCGCTCTTTTGAGCTTATTGATACAAGGCACGATTTTGGTGATCTTGCTTCTTCATCGTCCGAAGATGGCTATTCGTTAAACCTGTGGATCCAATAGGACATTTTGGCCATTTTTGTTTAAACTGTCACGCTATTTACCACATACCAAAGTTCATTTTAgccttcattttaaaatttataagCTACACAAGACTTAATAGGAGCGCACACACGCTTTCAATAGactattttacagttctgtgcttagATACTTGGCCTATGAATGAATGTGAGGCTAGAGTTGAcgttgttttgatagaaacctcaatgcttttcttatgtaaattccaactAATTAGAAAGAGAATAAAGTCTTTTACGTAAGAAAAGGatggaggtctgtatcataacaaggtcaactccagcctcactttcagttaaaggccaggtaactaagcacgtAACTGTAAAATGTCTGTTGTAGAAAAACACTGCTTGAACAAGCCTAAAAAAAGCAATGTACTAGACGCTGAGAGGGTGTTCCAATTTACCCTGGTCCCAGGGGTTTTTCTGGAGCCGCGGGAGATTGGTAATACCGAGGGGACGCGTGATTACCAAGTTGCCATTGATCCCTTTTGTAATTGTCAATTTGACGCGTTTGACAGCTGTCGTATGCATAAAAGTGAGATTCAAGACCAAGGtaacaagaggtttttctcttatCGCTGCTTCGCGACTCGTCTTGGACGCTTCGTGGCTCTCTCGAGGCTCAGGGTGGTTTCAATTAGTTTTTCGTTCCAAAAAGCTAATGCGGATGCCGAAATGTGGAAGATTCGGAAAATTCGTGGTTTTCATCCTATACACCGGAATCCGGAAGATTCTTGTCTGTAAAATCAGGAATCCTGCTATATTCTGGAATCTGACCATATCTGACCACGCCAGGAATCTGAAATGAAGATTGTCTTGTATTACCTTACATGGTGCGATGATTTTTATTTGCATGTAAAATAAAACTGATGGGAAAATTAGAGAATTACAGTCAGTGAGCCAGGCAGTCTGGCCCTTAAAGATATGTACATTTCAGTAATTTTTAGGTGAAATAGATACCGAAGTGTGTTCCCCTAGTTGACCGTATATGCAGTAGGCACTCTCAATCACAAGAAATT

Protein

Uniprot

Uniprot term	Description
P0C6B8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47635	CUB DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13047	TLL2; tolloid-like protein 2	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala