Gene detail

Detailed information of XP_068707544.1 in Montipora foliosa

Genomic Location: chr6:20738097...20772566
NR annotation: XP_015763016.1, PREDICTED: serine/arginine repetitive matrix protein 1-like [Acropora digitifera]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138005175

ATGTTTTACTCAGTTGACATTTTGACACGAAAGGGAAGACTTGGCCTTATTTGGCTGGCTGCCACTTACGGTGAATCTAGAAGAGGAATGACACTTCGGGAGTACAAAAGAGTAAACATTTCAAGAGCATGCCGCGATATTATAGATCCTGTTGTCCCATTCGCTCTTCGTTTGTCCTCTAATCTAATGGTTGGCGTGGTACGAATTTATCGTGAACAAACGAAAAATGTCTGGGTTGAAGCGACGCATGTTTATAGGACAATAAAAAACGCCTATGGGATGAGAATCAGAGACATTGACCTAGCAAATCCAGCATTAAGGGAGGACGCTATCACAGATTCTTTGGATTTCTCAACGGAGTCGTTTCGCTTCGACTTGGAAATTCATGCAGTGGGCTTTATGGGACCGGAAGGCTACTTTCAAGTGAATGGTAACGGTCATTCGTACCCATCACTACCTCCCACGGGGCATTTCAGTCCTCCCAGTCTACCAGGCACACCTGTGCAACTAGCAAGGCCCGGTTTGCCTCAGGAATGGAGGGGTCCCTCTGGTTCAGATATTGACTTAAGCCCGTATCAAGCAAGGGAAGCCGATATTAAGATGCCAGAAAGGGATCATGTACGAACACGGCAGGACGAACCAATTACAATTCCCGGTGAGTTGGATATAACTGGAGACCTGCCGCTTCCAGATGTTGCAATGCCGGAACATCCCGCGCCTGGTCAGCAGCAGCAACCTCCCCCTGATGTTCAGCGACGGTCACCACGCCCTCGTTCCCGGTCTCCTCGTCGTCGTTCCAGGTCTCCTCGAGCTCGTTCCCGGTCTCCTCGTCGTCGTTCCAGGTCTCCTCGAGCTCGTTCCCGGTCTCCTCGAGCTCGTTCTAGATCTCCTCGCCGTCGGTCTCCGTCTCCTCGACAACCAATTTCACCTCCCCGTCCACAGTCTCCAAGAAGACCGAGAGACGAGCAGGTTGCGGGACCAGAAATTCCATCTCCGAGTCCTCCTCGCCCAGATCCTTTGGTAGAGGAGCCGTCCCTAGCTGATGTACTGATGATAGATGAGGTAACCGGGCAGTTGAAAATGCCTGAAGTGAAAGATAAAGATCGTGTTGATATCAGTCCTACAACAATTCCAGAGCCTGAGTTAGCTGTCCCCATTGGATACGATACCCCTGGAGCACCTGTTGTGACCGTAACCCCATCGCCGCCAAGAAAGAGGAGAAAAATCCGCGTTGATGCGATGACGCAGCTCAGTCCTAACGTCATCAAACGGAATGTACGCACCGGAGGACGCGAAACTTTGTGTGAGCGGAGGCTTGATGAGCATCACTTAAAATCAGCGAAAGATTTGTTTATGGAACCAACAACAGAAGTTACTAGGCCAGAAGTTTTGAATTACAATCATTTATTGAAAGTTAGTGTTTTTCAAGCTCTTTGCAGTTCCCCTTTTATTGAGATTTGGAAAGCAAATGCGGTCACTATTCACGGAGAATTTCCCTCCAGCGATTCTGGAAGCTCGGGAAAGGAGAGTTCAGGGCCTTCTAGGTCACCATTGGGGGAAAGTGTTGAGGTTGCTAGGAGCATGGACACACCGTCTGAAAAGGAAATAGCACGAGCAGCCCCCCTGGCCGAGGGTTCAGGATTGTTTGAAAGGTCAGATGCAAGTTCATTGGGCTTAACGCCAGATCTTCCAGATGTTAGTGTTCGACCGAGGGAACCTTCCTCGCTGAGTGGTGATCGAGGCTTGAGAAGCGAGGTCGACATGGACCCAACTACTGCACGTGCAAGATCTTCCTCAATTCTGCGTTCATCTTTGACTGGTCTTTTGTCACCAATAAAAGAACCGTCTGATCTGGAGGATTATATGGAAGAAATTGGTGATCTTCCAACCTTGTTGGAACAGACTGAAATAAGGCAATCACTTGAGGATCAAGCCTTTGATATCTGGAGGTTAGTGAGCAAAGCTTTCAGAGAGATTGCTGAACCTTTTGTCTTCTTCAACGTGTGGCCTCCACATTCGACTTCAAGGAAAAATGCAGCAAAAGCGTTCTATCATCTTCTTGCTCTACACAAGAATGGAGTAATTCAGCTGGAACAAAAGAATCCTTACATGCTGACTAGTATTTACATTTACAAGGGAGTTAATTACTGA

Transcript

rna-XM_068851443.1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36626	Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rec8 PE=1 SV=2
Q3SWX9	Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1
O60216	Double-strand-break repair protein rad21 homolog OS=Homo sapiens OX=9606 GN=RAD21 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006844 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04824 all species →	Rad21_Rec8	Conserved region of Rad21 / Rec8 like protein	Family	Interproscan
PF04825 all species →	Rad21_Rec8_N	N terminus of Rad21 / Rec8 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023093 all species →	Homologous_superfamily	ScpA-like, C-terminal	Interproscan
IPR039781 all species →	Family	Rad21/Rec8-like protein	Interproscan
IPR006909 all species →	Domain	Rad21/Rec8-like protein, C-terminal, eukaryotic	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR006910 all species →	Domain	Rad21/Rec8-like protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12585 all species →	SCC1 / RAD21 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0007062 all species →	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278 all species →	Cellular Component	cohesin complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068707544.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.