Gene detail

Detailed information of XP_068708346.1 in Montipora foliosa

Genomic Location: chr6:58014422...58019048
NR annotation: XP_029194440.1, single-stranded DNA-binding protein, mitochondrial-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8A5I7	Single-stranded DNA-binding protein, mitochondrial OS=Danio rerio OX=7955 GN=ssbp1 PE=1 SV=1
Q95KK4	Single-stranded DNA-binding protein, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=SSBP1 PE=2 SV=1
P28042	Single-stranded DNA-binding protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ssbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00436 all species →	SSB	Single-strand binding protein family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011344 all species →	Family	Single-stranded DNA-binding protein	Interproscan
IPR000424 all species →	Family	Primosome PriB/single-strand DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10302 all species →	SINGLE-STRANDED DNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0009295 all species →	Cellular Component	nucleoid	Interproscan
GO:0042645 all species →	Cellular Component	mitochondrial nucleoid	Interproscan
GO:0051096 all species →	Biological Process	positive regulation of helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03111	ssb; single-strand DNA-binding protein	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068708346.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

84.0Max TPM

41.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	41.33	84.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	84.03
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	83.95
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	77.51
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	77.44
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	75.16
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	74.63
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	68.88
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	68.49
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	67.82
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	67.40
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	62.75
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	59.54
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	57.63
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	56.26
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	56.17
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	50.61
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	48.96
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	43.52
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	41.48
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	37.73
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	34.83
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	34.42
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	33.70
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	32.94
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	30.30
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	22.46
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	20.18
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	18.96
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.