Gene detail

Detailed information of XP_068710383.1 in Montipora foliosa

Genomic Location: chr6:41968766...41975624
NR annotation: XP_015762603.1, PREDICTED: ELAV-like protein 1-B [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068854282.1

tttttcccatGTGTGTCGTGAAAAGCCCTAACAATTGGTTGACTTTTGACCAACGAAAAGCATTTGAAAGAAAGGGCAAGCAGTTCCTCCAGTGTTGTGGTCTAGCCTGAATGTTTCCCAAGTAAATGCCATAAGaaTTTAATAAAGTAAAGCCAAACGTCCCAGAAATCCTTTTTGTGCAGCTTTCCTAAGGCACCTCTAGCAGGCCAAGGAAACCAAAATATTTGTATCCCTTGCTTAAAATTTATTTCTACTATGGCAGAAGCAGGAGTCCCTCATAGTGATGCGACTGAAAACAACACCAACTTGATAATCAACTACTTGCCACAGAGTTTGAGTGATGCAGACTTCAGGGCTCTCTTTCAGTCGATTGGCCCAACCAAATCATGCAAAATTTGTCGACACAAGTCAACTGGATACAGCTATGGTTTTGGGTTCGTGGATTATTTTACGCCTGAGCATGCTCAGTTGGCTATTGATACCCTCAATGGTCACCAACTTGAAAACAAGTTCATTAAGGTGGCTTTGTCAAGGAAAGGAGGGGAAAGGAGTAAGGGAGCAAACTTGTACATACGTAATATACCAAGATCATGGACATCTGAGGAACTCAGGGAACTCTTTAAACCTTATGGTAACATTATTAATAGCAAGGTACTCACAGAGCCAATGTCAGGGTGCTCGAAGGGTGTTGGGTTTATTCTTTATGACCTGAAATCTGAAGCTGAAACCGCCATAAATGCCATAAATAATACCATTCCTGCTGGGTGCTCAGAGGTAATGTATGTTCGTTTTGCCGATGAGGGCATTAGTAAACTGAAGTCCCCTGGAGCCGCCAGCCCAGCTGGTGTTCCTGAGCGGCCAAGTTTTAATCTTGGTGAGCAACAGTATCACCAAGGTGCAATTGGTCCTATGGGACAAGCACTCATGAATCGTCGTGCCAATCGATTTAACCCAATGTTTGGGGGCCCCCAAATTCCTCCACCATCAGGCTTCAACCAGATGTCTTCTGAAACTAGTGGAGGCTATACCCTGTTCGTTTACAACATTGGAGCAAGTGCAACGCAAGCTTCAGTTTATAAACTCTTTGCACCATATGGTGAAGTAACAAAGGTAAATGTCATGTGGGATTATGAAAAGGGGCAGTCCAAAGGATTTTGCTTTGTTACTATGGCTGCATTGCAGCAAGCACAGGATGCTATTCGAGCATTAAATGGGTACACATATGATACATATCCCCTGCAAGTTAAGCTTAAGACTCCCAAGATGACATATAGCTAGGTGAAAACCATTGAACACAAGTTAAGTACAGGATCTGGGCAACTGACATTTGACACAAAGATTAATTAATTTAGCTGCTGTAGTTGGGGGGATTTTCATTAAGGCAATGGCATACAATGAAATCCTCAGCACATTTTCGCAAATACTTTATTGAGCAAAATGTCGGTATCACCACAGTCATTGGCTGTACTGCCAACTACTGCCAGTGTTATTAGAGACAATACATGTGTACATACAGGGTTCTTGTGGAGTTTTGCCAGCTACAGTGCACAAACATTAATGTTAATAACTTTTATTTGCATTGAAGAACAGAAAGCACCAACATACAGTCCCACTTAAGAGATCATGCATTTGATTTTTGAAGGATGCGTTGTTgtgcaaaagttttttttccattttacaaCTGATTATCAGTTACATAAGCAACTCAAGTCCATGTAATAAAGCAGTGCAACACTCCTGATGCCACTGATAACAGCTGCAAGTAACAGTAATCTAATAAGATTAGAATCTATTATTGGATACTGAAGTTAAAGTTTGTATTGCAAAGCAGTCATGCTActctggtttgaagaaatttgataAACCTCTACAGACTGAGCATTAGGGCCATACTGGGGATTATTGGCCCAGTCTGTACAAAAATGCCctagggccaatattccccatggcccggttgttcgaaagctgattaacgctaatcccttATTAAAAATACCAAGGAGTTAATTACTCCACTCCCAAAATAATGCtcttcaacgctgatattcggcaaaactttacattagaagaggtcaatcttgaaaaagaaaaataagcaaaagaaactttcaccaaaaagttgaaaaattaaaccaaagtttatgctaatcatggattaagttaatcggctttcgaacaaccgggcccagtagGGTACCGAGCAAGTGATGTTAGTACAatgtaagttgtttattatatgagCGATTGGACACTTCTCTGCTTGGTGAATGTTTGTCATCTTTGATCATCTAATTTAAATAATTCTGCTTGCTACAATAATGATTGTACTGTTGTGTGAACAAACTAAATTCCacgttttaaaaactttttctcTTTTGCTTAACTTGAATTTCCTGGGAGAGAGTAAAAATACAGAAACAGACCGtcttccatggtaatggtctgtacagtaaaatcccgaccaaaaaccaggcaatcagagtgctccatttggcttgagaattgcttgccatacaATAATGtatctcaattttttttcaaaagttgCAATCCAAAGACCACTTTGAATATTATTGTAACTTTTCAGGCtacatttaattattttcttcaaatcAGAGGAGCATCAAGCATTGTCTATACAGGATACAGTTCTGCCAAGCAAACTTTCTCATGCATATTATCAAAACCTGTTAGAGCTGAATTCTCACCTAAGAACCCCTTAAGATATTTCCAGTATAAGCGCTTTTCCATTTCACCAGAATTGAGAATTAaagtcacattttttttttaataacttaATGTACAATTGTATGTTCAAAAACAGACTGTCAGTTTGTAACAGATGTCTTGAATGCTAACAGCAAAATTAATGAACTATAACAACATTTAGGGACGCTCATTACATTATTACCATTCGACCCAATTACTTAACATGTTGTCCTCATTTTGTAGATGGGTCAAGTCTATTTTTGACTTAGAAGTACTCTTCATGATTGTATGTTAAAATGGAGTTTTACAAAAGAGTTGCTGCAGTGGCGTTAGGAGTCACCtttcaaaaccaaatttttgaggCTGAACTCTTTGATAATTTGTGTCTGTGAGTGTAGACAAATACTTGTGGATGTTACCTGTAAAGTGTCTATCAGGAAGGTGTTAAATAAATTTCACTATAAATAAaa

Protein

Uniprot

Uniprot term	Description
Q5U259	ELAV-like protein 1-B OS=Xenopus laevis OX=8355 GN=elavl1-b PE=1 SV=1
Q6GLB5	ELAV-like protein 1 OS=Xenopus tropicalis OX=8364 GN=elavl1 PE=2 SV=1
P70372	ELAV-like protein 1 OS=Mus musculus OX=10090 GN=Elavl1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13208	ELAVL2_3_4; ELAV like protein 2/3/4	-	Spliceosome	ko03041	deepkoala