Gene detail

Detailed information of XP_068711981.1 in Montipora foliosa

Genomic Location: chr1:5890841...5944008
NR annotation: XP_029186542.1, C-Maf-inducing protein-like isoform X1 [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138008528

ATGAATTTAAAGCGTCGTTTGAAAGCATTTTTCTCTCCGCCTTTATGTTTTTGGCGAAGATCAAGACAACGAAGACAGAAAATCATAGAGTCGGTGAACCTTCTGTCAGACGCCTTGGCAATAAACACTGCCATGGCAGTGGCAATAGGGAACGGAGGAACACAGCGACCCCAAAGACCTCAACGATGTAGTTCAGGCGGTGGACCCAAATTCAAACTTATCCACGAAGGCGACATCCAAGTTTGTCGTTTGAACCACAGCAGGACTTTAATCAGTAAAGTGTTGAGTTCCAAATTTTTGAGAAGATGGGAAGCACATCACATTTATCTGGGAGATTTCCAGCTGTATTCCTCCTCGTGTGTAGGGTTTATGGAAAGTCCTGTATCGTATCAAGATATTTTAGAAGCATACACTGTCAACAGATGGGATACTGGCCAGCACTTCTGTATCAGAGTAACCATTGCTGATGGCTCAGTACTACTTAAGGCATCCAATGCTTACTTAAGAGATCAATGGCTTCACTCACTTAAATGGAAGGTTAACTTATTGAGATACAGAAGACTTATATCCAAATCAAGTGATCCAGAAGGTCTTACAAGGGAACTTAGGGAACTGGTTCTTTTTTCACTTACTACACCAATTCAAGATGACGTTATATTTACCGTCCCACTCCAAATGGTCTCCGGCATCCTTGCACGTCACTTTGTTTCATTAACGGATGAAGAACAAGAAAAACTTATAGTGACACTTGCACCTGTCCTGGAATATGTCCAACCATCCCCAGAAGTGTGTGCTTTCTTTAGCAAGCACTGTAAAGGCCAGTTGTTCAATAACGAAGTGTTGGATGCCTTCCTTCCAGCTGTTCACAGAATTCTTAAGCACAACATGGATTTCGGCAAGTATCCTCATCTCAGAATGTTTGTTCAAGATTACGTTTATACACTGTTCTGTAAAGATGAAGATGCGGATGTTGTTAGAGATTTTGTTGAGAGTGTTCACAGCCCAGGTGCTGCTTGCCCACATCCTCGTGTTCTACCAAATCTTGTGGCTGTTGTTCTGTCTGCTGTATACTCCACATTTGACCAAAGTGACAAATTGCTTGTTAAGTATGATGAAATCAACACAAAGTTCCTTCTATGTTTTATGACAGTCATGGACACAATTGCTCAGTTTGAAGACTGGAGACCCAGTCTGTCTACACTTCTGCAACCAATTCCCTTTCCTAAAGAAGCCCTGAAAAACGAGACATTCGTATTATACATCAGTGGAGTCATCAAAGCCTTTGCCGAGGATCAGCGCTGTGAGGTTCATCAGTCAATACTTCCAGTGAGAAAAGGGAAAGATGGATGGATAGACATTATATGTCCAGGAGGAGTATCATGTTTCGACGAAGGACATTTTTTTTCTCATGTAATGTCCAGGCTTCTAGATTGTTGTGGGAGAAGAAAGAAGGCTCTTTTGGAGCTGAAAGATTCCATGCTTGGTCCTTTCATGCTCCTTGCATTAAGAGGAGAAAGCAGTTTTATCCAGACACTCTCGTTCATGTTAGAAGTCGAGGTCCTTCAGGATGAGAACGAAAAATTACAGATTATATCAACATTGGAGAGCACTGAAGAGGGCAAAGCGTGTTACGAGGCGCTTTGTTTGAAGAAGGCCAAATTCAGGCAAATGCAGGAGAAAGGTGGACCTACGGTTCTTACTTTACCAACAAAATCAACCGACGACGATCTTGCTCGGCTCCTAAAGTCAGGTTCATTTGGCAATCTGAAGAGCCTTAATTTGGCCTTCACGCACGTGACCAGTGCATGTGCCGAGTACCTGGTTCAACTTCCGGCGCTTTTGCATTTGAATCTGTGGTCAACTCAGTTTGGAGACAGAGGCCTTCACATGGTCGCAGAGCAGCTCCACAATTTGGAGTCGCTGAACCTCTGCGAAACTCCCGTGACAGATGATGGCCTATCTTCCTTGGTTATCATGTCCAATTTGAAAAACTTAAATCTTAACAGTACCAGACTCTCACCTACAACATACGAGAAATTAAGGAAACTGCCAAGGCTCGAAGAAATTGATGTGCGGTATACAGATGTTTGA

Transcript

rna-XM_068855880.1

TATACATCAAGATTTGTTAAGTGGCCAGTCAATATGAATTTAAAGCGTCGTTTGAAAGCATTTTTCTCTCCGCCTTTATGTTTTTGGCGAAGATCAAGACAACGAAGACAGAAAATCATAGAGTCGGTGAACCTTCTGTCAGACGCCTTGGCAATAAACACTGCCATGGCAGTGGCAATAGGGAACGGAGGAACACAGCGACCCCAAAGACCTCAACGATGTAGTTCAGGCGGTGGACCCAAATTCAAACTTATCCACGAAGGCGACATCCAAGTTTGTCGTTTGAACCACAGCAGGACTTTAATCAGTAAAGTGTTGAGTTCCAAATTTTTGAGAAGATGGGAAGCACATCACATTTATCTGGGAGATTTCCAGCTGTATTCCTCCTCGTGTGTAGGGTTTATGGAAAGTCCTGTATCGTATCAAGATATTTTAGAAGCATACACTGTCAACAGATGGGATACTGGCCAGCACTTCTGTATCAGAGTAACCATTGCTGATGGCTCAGTACTACTTAAGGCATCCAATGCTTACTTAAGAGATCAATGGCTTCACTCACTTAAATGGAAGGTTAACTTATTGAGATACAGAAGACTTATATCCAAATCAAGTGATCCAGAAGGTCTTACAAGGGAACTTAGGGAACTGGTTCTTTTTTCACTTACTACACCAATTCAAGATGACGTTATATTTACCGTCCCACTCCAAATGGTCTCCGGCATCCTTGCACGTCACTTTGTTTCATTAACGGatgaagaacaagaaaaacTTATAGTGaCACTTGCACCTGTCCTGGAATATGTCCAACCATCCCCAGAAGTGTGTGCTTTCTTTAGCAAGCACTGTAAAGGCCAGTTGTTCAATAACGAAGTGTTGGATGCCTTCCTTCCAGCTGTTCACAGAATTCTTAAGCACAACATGGATTTCGGCAAGTATCCTCATCTCAGAATGTTTGTTCAAGATTACGTTTATACACTGTTCTGTAAAGATGAAGATGCGGATGTTGTTAGAGATTTTGTTGAGAGTGTTCACAGCCCAGGTGCTGCTTGCCCACATCCTCGTGTTCTACCAAATCTTGTGGCTGTTGTTCTGTCTGCTGTATACTCCACATTTGACCAAAGTGACAAATTGCTTGTTAAGTATGATGAAATCAACACAAAGTTCCTTCTATGTTTTATGACAGTCATGGACACAATTGCTCAGTTTGAAGACTGGAGACCCAGTCTGTCTACACTTCTGCAACCAATTCCCTTTCCTAAAGAAGCCCTGAAAAACGAGACATTCGTATTATACATCAGTGGAGTCATCAAAGCCTTTGCCGAGGATCAGCGCTGTGAGGTTCATCAGTCAATACTTCCAGTGAGAAAAGGGAAAGATGGATGGATAGACATTATATGTCCAGGAGGAGTATCATGTTTCGACGAAggacattttttttctcatgtAATGTCCAGGCTTCTAGATTGTTGTGGGAGAAGAAAGAAGGCTCTTTTGGAGCTGAAAGATTCCATGCTTGGTCCTTTCATGCTCCTTGCATTAAGAGGAGAAAGCAGTTTTATCCAGACACTCTCGTTCATGTTAGAAGTCGAGGTCCTTCAGGATGAGAACGAAAAATTACAGATTATATCAACATTGGAGAGCACTGAAGAGGGCAAAGCGTGTTACGAGGCGCTTTGTTTGAAGAAGGCCAAATTCAGGCAAATGCAGGAGAAAGGTGGACCTACGGTTCTTACTTTACCAACAAAATCAACCGACGACGATCTTGCTCGGCTCCTAAAGTCAGGTTCATTTGGCAATCTGAAGAGCCTTaatttggccttcacgcacgtGACCAGTGCATGTGCCGAgtacctggttcaacttccgGCGCTTTTGCATTTGAATCTGTGGTCAACTCAGTTTGGAGACAGAGGCCTTCACATGGTCGCAGAGCAGCTCCACAATTTGGAGTCGCTGAACCTCTGCGAAACTCCCGTGACAGATGATGGCCTATCTTCCTTGGTTATCATGTCCAATTTGAAAAACTTAAATCTTAACAGTACCAGACTCTCACCTACAACATACGAGAAATTAAGGaAACTGCCAAGGCTCGAAGAAATTGATGTGCGGTATACAGATGTTTGACTGCTCTGTCGTGACATGAAACTGTAGATGCATCCGTGACCGTGCTACGCAATCAGATGAACATCACTTCAAATAGTTTGCGTTACCATAATGGTGGCCAATATTTAACGGATTGTCACTTTGGTAATTCTTTGAGAGGTCAGGGTTCCGACATGTAAATCACGTTTATCGCTTATGCTGTCGAAAGTATTACGTCGTTGTTACAATTAACTTGAACAGGCGAGTTCATACTGGGGTCCAAGTAGcccataagtgcgacagaaactcaagtcaacCCGAGGCTTACTTGACGCCTTATTAAGAATCGTGTTTTGATCTACTCAAGTACGCATTCGAGGGGGATAAGACTTTACTTGAGATCGTACTTCGGCTTCTGAAGATCCTTCGTTTCTATTTTAAAGAAAAGTAAGCTGCTTTAATTTAAATAAACCTCGTTCCCATTCAAAGTTGAACCTAAGCCTTCTTACATGTACGTCCCCAGTGTGAACTCGTATAAAGTGGCTCCCCAGAGTAGGGTATCAAATCGTTATCGAAATTAATGAAGATATTGTTACTATATTATCATTCATCGTCCCAGTGATCGTAATCGTTAAATGACATTATACCTGAGTGGGAATTCATGTCATGTAGATAAAAATGCAATATCTTGCCTCTTAGGAAGTGTTTATCGCCTCAAAAATTTGATCCGCTACATTAAGTCTGTGCATTGGTCAAAAACTAATTCGCTTCGTTTGCTAACTGAACTCTGTGCTGCAAATTCGCGGTTTAAGTGGCTTCCAAGAAAACTGGGAAAACCAACTGTAATTTGATCTACCACCGAGCAAAGAAGAAGATTGAGTTAAATTGCGGATTGTCGCCGCAAACTACTTTGCACAAGGACAGTTAGTTCTTTGAGAAGAGCGATGCAAAGTAGTTTGTGCGGTCCCCGGTGtagaacccattccccttcgtTGTTAGGTCATGGATCAAACTGTGGCCACTCCATTCATTGCAAATGGAAGAGTGTTTTCAGCAAAAAAGGTtacgaaaaaaataaatcaaggAGAGAATAATTGAAGCAGAGAAGTGTGTTTAAGTTATAAACACTTTTAATGGCTTCTAAACTGATGTCCGCACAGGCTAATGCCACGGCAACATCAAGGCAGAACCCCTGACCCGTTCACACGGGTGTTTTTTGCTGTGATTTGGGGTGCGATTTCTGCTGCGATTTCTGCTGCGATCTCTGGCGACGCGAGATCGCGCGTGTGAACAGCTGGCGATTTCACTGCTACTTTCAATACGATGTCTGTTGCTATTTTCCGGTGGTTTGTAAAAACaatccccagctaaaactgggaaATATCCGATGCTATTCCCCGATTTCCCAAAACTTTggctattaaaattaatttcacgACGGGGGAACGGTTCGTTTTTGGTCCGGAAGAAGAAATAAAGTTCACAGTTTTTCTCGAGCTTCGCTTTTCataactgttcgcttctcggaacagacaatgtccgcggacaaatatttgagcatattttcgcgccaaacgGACGCGATAGAGCGttccacatgacgtcacggcagccatgttggtgttccaaactaatcctctggcaattgaactctatttttatgcaaatagtttcGTTTGCTTCATcaaattagcatttattttagtcacgtgagtgaaaacgctctattgtttatttatcgCAGCAGCGCATATTTCTGAAATCGCCGGCTCTTCACCCGTGCGATTTTGTGTCGCCATGAAATCCCCGTAAAAATCGCAGCGGAAATTGCACCCCAAACCGCAGGAAAATTTGCCCGTGTGAACGGCGCTTCATTTTCTTCTTGGTCTGCAATCCTAAAAGTCCGATAAAGTCCCCTGTGCTTTCCGTACTGTAAAAGAAAATCCAATGATTTTACGTGAAACCTTGTTATACTCTATTGTATGTTAAGCAATCTGCGTATCAATTCTGTATTTTGTTTCGGATGCTTTGCTCGACTTGAATCTTTTagcaatatttcttgtttacaaacagtGACGTCACATATCTTTTTATATCCAAATTTGCCAACTACGGAACAAATGAAGGCATTGTTTCAAcgatgaatgaaggggtagtttctaaagaaactgtggtgctgcgtcggtggtgaagtagtatacaaaaatttggttttatcaacggagaatctctgtacggtggccaatttacattatcaactccgttgataaaaccaaatcattgtttcaacagccgattaggttctggttggcatattaataacattGGGCGaagtcacgagaaacatcgctatacggatcaaaccttttttttttacaataattattaattcttttctttttaaaaaccaGTATGCTACCAATATGGCCGTGTGGGTATAATTGCGGCTTCTATGCGGCACAATCCCTAGCGCAGTATGTCCAAGCGAAATCAAAAATTAACAGAATTGCAATTTCTTTAATTTGGGAGACCAACGTGACCGATACCGTGGAAGCTTCGTTTGGACCGTGGATGACGATTAACCAGTATATCTTGGTGTCGTGAATTGACCGTGGTCAAATATTTAATGTTGAGATGACTTCACGAAGGGGAGATGTATTTGATCCGGTGAAGTATGAAGTTGAATTTTCTGCAGATGTGGAATCAATTGACCGATTTCGAAGTGTGCAAGAACAACATAACAAGAGAGTAGGGCAGgaagttttctttttgcgtAACAAAAAATACAAATCAATTATTTCCCTGAACTTAGactctttctttttgttcttgtttcctttttatttatttatttttttttggtgagaaaACACGATTTATTTCCTCGAAACTCGACTTTCGTTGTTGCACATTTCGAAACTAATCCATTCTGTCATGAAAGAAAGTTGcatgtgacgtcacagcggccatgttggtgggaatttgactctgttATCAAGCAAATTTTGAGCCacagtttctattgttttggcaccaacgtGGCCGTCTTATCGCAGAGTGCAATCAAACAATATCAGAAGCGCTCCAGCGGTTAGAGTTTTGGAAGCTCAAACTGGAATTGCGTTCATATTGGGTCCCTGTGTCTGTACAGAATCATATAATCAAATAACTGTAGAGAAAGTATAAGTATATCAAAATTGTAAGGGTTAGTTAAAAagttataatttattattggtaGGGAATATACGTTACTCGTATTTTACGTCCCTCTTCACCATGAACGAGTATGAgtcttaaaaaaaatacacatttcTTCATTTTGCTTTATATGCCTCCCTGAGGGAGTAAGATCACTTGAAGTATGTGCCCACGTCACTCATAATTCCTAAAGGAGATGCAACTGCTGTGATGTGCATTTGCGATGTGGTACTGGCCTGCGCATTTCCTGTGGGCGAACATGCTCTTTCTTACCTTACCTACGAGGTAAAGAGCGTAAACATgggcagcttctgcaggtaccggagcagaaatgacgtaaaacaaaagaaacaaagacagaaaacaaaacaactccaagtaaagactaatcccaagtgaccaaaaacacaatgctttccggtacttGCAGAAAGACCCTAAACATGCGACTATGTGGAAGGTTAGATTAATTTCTTGGCATAATATGGAATGAGGTGTGACCATGCAGCACCATATCAAAGGGTCATTCGGTGAAGTGGCGCATGCGCCGTTCCGAATATATTGGTGAAGACGTGAAAAAATTGTTGGGTGCCATCGCTTGGGAAATCTTAAACCTTAAGGATTTGACCGTTTCTGTTAATCACTGGCGTGAATGCCAAtccaccacgaaacctatgtaTTTTAATTGGTTTTGTGTTCGATGAGAAAAACTATCTTCTACCTGGATCTTGATATCATATACAGATTTCCCATTCGAAGGCAATCAAAGTTAATTTGCACTTGGGGAGAATGAGCTTGTCTTCAACATTCTTTGTTTTATTCTATTTCGCCCTTGTGTTGTGCGAAAGCACAACATTTGGAATAGTATTTTACTAAAAACGAGTGTTGGTGTTGAAATCCCAATTCTGAGGAACATTGAAATGAAGCCCATTTAACCTTGTTGTCAGAACAAGGTGTGGGAACAAGTTAACTTGTTATTTGGTGTTGGTCCACTCAAAGGCTGTatctcattttctttttttaatggaCTCATTTAAAGTTGTGGACACGTATATCAACGAGCATGTTATGAATTATCGCTCATTGTAAATAAAGTACCTTACAAAGAACTTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L3F5	C-Maf-inducing protein OS=Xenopus laevis OX=8355 GN=cmip PE=2 SV=2
Q8IY22	C-Maf-inducing protein OS=Homo sapiens OX=9606 GN=CMIP PE=1 SV=3
Q9D486	C-Maf-inducing protein OS=Mus musculus OX=10090 GN=Cmip PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005302 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_068711981.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052813 all species →	Family	C-Maf-inducing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25480 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_068711981.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068711981.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068711981.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

60.7Max TPM

30.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	30.13	60.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	60.65
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	56.83
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	56.05
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	49.79
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	49.33
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	49.04
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	48.33
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	48.21
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	47.32
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	46.32
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	46.05
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	44.83
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	42.41
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	38.76
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	38.69
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	37.62
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	37.60
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	33.91
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	33.83
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	31.46
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	30.03
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	29.89
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	28.53
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	22.62
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	21.90
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	20.34
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	13.36
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	8.99
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	6.89
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.20
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.