Gene detail

Detailed information of XP_068713402.1 in Montipora foliosa

Genomic Location: chr7:3871675...3903636
NR annotation: XP_029199721.2, protein NEDD1-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138010370

ATGGCAACAAAGATGCATCTGGCGTCTTCCGGAGGGGACATAAAGATCTGGAACATGCCGGAATTGGCAATGGCGAAAAGTTTTAGCCCGCACTCACATCCTGTTGGATCTCTGTGTTGGAGTCCAAATAATCAATGTTTGGCCAGTGCAGCTAACGATAAAGTTGTGGTCACTTATGTGAAAGGAGATGTTTATGATATTACGGAAATTGGTGCTGGGGAGGGAAATACCTGTGTTGCCTTTAATTCATCATCTCGATATTTATTAACTGGTGGCAAAGCCAAAACACTTAATATCTGGGATATGAAGACAAAGAGCATCAAGAAAACTTACAAGGATCACAAGGATGTTGTTTCTTGTTTGACATTCAACTGGAATGACACGTCAATTGCGTCAGGATCTGTTAATGGTGATATTCTTCTTCATAATGTAATCTCTGGACAAGCTTCCGATCCTCTGAGACTCGTAAAGACACAGGCTGTGAGAGATATTCAATTTTCCCACTTCAAAAAGAGTTTACTTGGTGCTGTCAGTGATGATTCAGCTCTCAATCTGTGGGATTCCAATACACGGAAACTTTTCACATCATTTACATCTGATCATAAAGCTCCCGCAACTGGACTGAGCTTCTCACCAATGAATGATATGCTTCTCTGCAGTGTGGGGCTTGATAAACGAATCGTTTTTTATGATGTTCAAGGGAGGAAGTCAGTGAAAGTTATGACAGCAGAATCGCCATTAACATCAGTTGATTTCATGTCTGATGGAGCCACTCTTGCAGTTGGGTCAACGAGAGGTAAAATCTACATATATGACCTGCGTAGTGGTTCCACACCGGTAAATACAACAGTGGCTCACAAAACATCTGTCCAATCACTATCATTCCATTCTGCAACAAAGGTTAATAGCCTGACCAACAGCAAGAGTACAAAGCCAAGTTCTGTGGTGAATTCTAAACCTCAGAAGCCTCCTGAGCCACTTGTGAACACACCAAACCCACAACCTTCCTCGCCAATAACAAAGACAGACCAAAAATTATTGACAAACACACCAACACTGAAGCAAAATGGAGTAAAGGATGATGAGGAGGACATCTTTTCACCTCTCAGAGAGATTAAAACACCTTTGATTAATAACAAGCAAGTCAATACAACTGCATCTTATAACTTAAAGGAGAGCAATCCACCTGAAGTGTCAGGAGTGTTCTCTCCAATTGGCAGCAATTTGTCTGGCACCAGCAATCAGCAGCCAATGCATCCTACCAGAGGCTCCCCAGCTACAGCTAACAGCAATGCAGCAGCTGATATGCAAAGGACCACAGATCAACTGGCAGCTGTAACTGGAAATACTGTGTCACCCCTGAAAAATGCACGATCATCTGCTACAAGGTCACTGACAGAACTTGGTACTGCTAGGGATCAGGCTTATGAAAGTTTGCCAAAATCATATTCAGACACCAAGCTGATTACAAACAGCAAGAATCCCTCTAATGGGATAATAAGTGAGAACTTTGAATCAAATAGAGATTTGTACCCATCACCAGCAGACAGTCTTCTAGCAAATGTACAGCGTAATATGAGTGAAGATATCAGGCCAGTGTCAAACAGCACATTACCTCACACAGAAGGCAGAAGGCCTTCAAAAGAATTTTCATCTCCACATGGATCTCCATCTTCAATCAGACGACCGGCAGAAGGAACAGAAATCGCTAATTACATGTATACGACAGATAGACCAGAATTGCATTCAGTATCACCAGCACAAAGCTTAATATTTGACAGTGTAAAACAGAGAACAGATCCATCAGCCAGTGGGACTGTTGGTCTGGCTGCATCACAAGACAATGCTCCTGATATGGCTGGTGCTGCAGCTAATTCTGCAGGGATGCTGCCATTTCAAGTTCAGTTTATTAAAAATCTTATTGATGAATCATTGGATGAGTTCAGAGTTGCAATTCACAGAGAAATTGTTAATGTACAAGTTGAGATGCTTAGGCAATTTCAAATTCAACAAAATGAACTCAAGGGATTGATAGAAAAATATTCAGTAAACGAAGCCTTGGTGTTGGAGATTGAGCGTTTAAAGGAAGAAAACAACAGACTGAAATCAAAATACTGA

Transcript

rna-XM_068857301.1

caaatgGCGGCAATATCGAATGTGGCTTGATTTTCTCACCCGTTCGGAAAAAATGTAAACTACTGGGACTTTGAGTTAATCTTGTGGAAAGGAGAGTGACTATGGCAACAAAGATGCATCTGGCGTCTTCCGGAGGggacataaagatctggaacaTGCCGGAATTGGCAATGGCGAAAAGTTTTAGCCCGCACTCACATCCTGTTGGATCTCTGTGTTGGAGTCCAAATAATCAATGTTTGGCCAGTGCAGCTAACGATAAAGTTGTGGTCACTTATGTGAAAGGAGATGTTTATGATATTACGGAAATTGGTGCTGGGGAGGGAAATACCTGTGTTGCCTTTAATTCATCATCTCGATATTTATTAACTGGTGGCAAAGCCAAAACACTTAATATCTGGGATATGAAGACAAAGAGCATCAAGAAAACTTACAAGgATCACAAGGATGTTGTTTCTTGTTTGACATTCAACTGGAATGACACGTCAATTGCGTCAGGATCTGTTAATGGTGATATTCTTCTTCATAATGTAATCTCTGGACAAGCTTCCGATCCTCTGAGACTCGTAAAGACACAGGCTGTGAGAGATATTCAATTTTCCCACTTCAAAAAGAGTTTACTTGGTGCTGTCAGTGATGATTCAGCTCTCAATCTGTGGGATTCCAATACACGGAAACTTTTCACATCATTTACATCTGATCATAAAGCTCCCGCAACTGGACTGAGCTTCTCACCAATGAATGATATGCTTCTCTGCAGTGTGGGGCTTGATAAACGAATCGTTTTTTATGATGTTCAAGGGAGGAAGTCAGTGAAAGTTATGACAGCAGAATCGCCATTAACATCAGTTGATTTCATGTCTGATGGAGCCACTCTTGCAGTTGGGTCAACGAGAGGTAAAATCTACATATATGACCTGCGTAGTGGTTCCACACCGGTAAATACAACAGTGGCTCACAAAACATCTGTCCAATCACTATCATTCCATTCTGCAACAAAGGTTAATAGCCTGACCAACAGCAAGAGTACAAAGCCAAGTTCTGTGGTGAATTCTAAACCTCAGAAGCCTCCTGAGCCACTTGTGAACACACCAAACCCACAACCTTCCTCGCCAATAACAAAGACAGACCAAAAATTATTGACAAACACACCAACACTGAAGCAAAATGGAGTAAAGGATGATGAGGAGGACATCTTTTCACCTCTCAGAGAGATTAAAACACCTTTGATTAATAACAAGCAAGTCAATACAACTGCATCTTATAACTTAAAGGAGAGCAATCCACCTGAAGTGTCAGGAGTGTTCTCTCCAATTGGCAGCAATTTGTCTGGCACCAGCAATCAGCAGCCAATGCATCCTACCAGAGGCTCCCCAGCTACAGCTAACAGCAATGCAGCAGCTGATATGCAAAGGACCACAGATCAACTGGCAGCTGTAACTGGAAATACTGTGTCACCCCTGAAAAATGCACGATCATCTGCTACAAGGTCACTGACAGAACTTGGTACTGCTAGGGATCAGGCTTATGAAAGTTTGCCAAAATCATATTCAGACACCAAGCTGATTACAAACAGCAAGAATCCCTCTAATGGGATAATAAGTGAGAACTTTGAATCAAATAGAGATTTGTACCCATCACCAGCAGACAGTCTTCTAGCAAATGTACAGCGTAATATGAGTGAAGATATCAGGCCAGTGTCAAACAGCACATTACCTCACACAGAAGGCAGAAGGCCTTCAAAAGAATTTTCATCTCCACATGGATCTCCATCTTCAATCAGACGACCGGCAGAAGGAACAGAAATCGCTAATTACATGTATACGACAGATAGACCAGAATTGCATTCAGtatcaccagCACAAAGCTTAATATTTGACAGTGTAAAACAGAGAACAGATCCATCAGCCAGTGGGACTGTTGGTCTGGCTGCATCACAAGACAATGCTCCTGATATGGCTGGTGCTGCAGCTAATTCTGCAGGGATGCTGCCATTTCAAGTTCAGTTTATTAAAAATCTTATTGATGAATCATTGGATGAGTTCAGAGTTGCAATTCACAGAGAAATTGTTAATGTACAAGTTGAGATGCTTAGGCAAtttcaaattcaacaaAATGAACTCAAGGGATTGATAgaaaaatattcagtaaacgAAGCCTTGGTGTTGGAGATTGAGCgtttaaaggaagaaaacaaCAGACTGAAATCAAAATACTGAATATAATGCCCTGAAACAAATATGcagAAAAGCTGTAGTCGACTATCGCAAGGGATGATTATTGCAAAGTTATCCCGAGAAATGAAATTGCTCTTTGGGTTGTGCTCCACCTTGCAGGTCTATGTGTATCCATCcatccaggcaaggaaatggCTACCATCGGTTTTCATGTGTTTCTGTCCTTAAGGtccgttcgattgaccctattccggagtAAGAGTCcgcggagtgatgatttaaaacggtatgtctggcgttttgaagcaacaaggataataaagatctttttaaaatatcattttagcaggtgtttgacaattttaatgtgattgtccgtaaaagcgaaggatttctaacttttatTCCACATATTCCTATTCCGTAATAGGGTCAATGGAACGCATCACCCGTAAGATTGGACTACCGGTATGAGTAAGACTTCGAGAGCGAGTGCAAGTTTAACAGTTTGAAGCACACTGTGTTAACCCACCTGGCTGAACAAAAATTGTTGGACGATCAAACATGTTCGGTAAACCAACATTTTAGCGTTTGGCCACCATTCAATGTTGGCCAACATGTTGCACGCGCAATGTGATCAGAAATTGAGTCGATGAAAGGATGTTTGacaccgtttggccaccccgtaATTTTCAACATGTTGGATCATTCAATATTTatcgtttggccaggccttacaAGGGCGACCTATAGATTTATAACCATACTCCAGTCTAAAGGTTGTTATTAAACTTAAATTCCTTTATTTACCCAAATGATTAACAACAAACCAATAAGGAGTTTTCACTGTGTAAGATAATCTTCATTTGTTTTGGGGCGATGGTGGCGTTATGTTGAAAAATAAGTATTTATGCTAAGCTACTTATTGTGGTTGGCAAAAAGGAGAATTTTTTCCGAGgagaaattaaattatttattaactttaaaaaaataccagGTTTTAACTGTTTTGCACGTTTAGACACATTCATGAAAGTGTTTTGTCCTTCAGAATCAAATATTTGCGAGAGTTTCACAACTACTTAAGCCTAGTAGGTGATTATTAGGCTCTGTTTACAAGGAGGCTAAACGTTTGTCGACCACTCTCCTCAAGGGGGATTTTGGGAAATTTGAAACTTAGATAGAAAATTAACATAAAAAGACTTTAATGTTCGGGGACTGAGGTGAGTTGGGTTATCTTATGAAAGTATTTTGTCCTTTAAGCTGGAGGTTTTGTTCAAATGACACTGAGCTATTTTTTCATGTTAAGAGATTTAAATGTTCTTGGAAACACTATTTCaacaaaattacatttttcagCAACAGTTAACTTTTAACAAGGTATTTTAATTGGGAGGGATAATAGTCTATGAGCCTTACTGTATAAGTGCGAAGTTGTTCATAGTAAAACTGCATTTACAATACTTTGCAGAGGTATTGAGAGTGAATCGACGAATTTTCGCTCCAAAGCCATGCGAAATGTTGTTTCCCTTGTCGCTATCAAACAAGTTCTCAGGTACTCGGATTTAGTGATAATCGTGAAGTAACGACGAAAAGAAACATTGTGGCTTACAGTTGGTATTCACTGAGATAAAAAACCTCAGTACCATCTCAGACATTTCGCACTGGGTCTCGACCTGGAAGTGAGGCTTAAATAATTCGGCGAAGGTTGGGTGATTGTTGTGAAATAATTTGGATATTTCGGATTCTTAAGGAGCAACAAGGTTAAGGTTTCAGCGAAAGTAGTCTGTCCAGCTTTATATTGGCCTAGACCTAgtatgaaatacatgtaaacgGTGAAGTGGTTAAGTCTGCCATTTGAAAATGAGACAAGCTGCGCGCAAGATATAGTGTGTGTGGGCATTTCGATGGTAAATAATATGTATTCAGCACAAAATTTGAATAGTTAAGGTAAAGGAGAGCACTAAGCATTTTTCTTGTTAAACTGAACATAAAAAGGGCGTAAGCGCGTCTTTTTGTAAGTAAACTCCGCTTGAACAAGTAAGAAAAAATACATGCAAGCAAAGAGTGTAACCGAAACAACAATCATCGACGATTGTTACAAATTGGTCGATTgctgatatttttttaaatccttTGTTTGCAATCACGTGATAAGACTACCATGTTGGTGcctaaacaatagaaaaatgtagcttaagttttgcataataatagagtcaaattcgcaaaagactttttcgctgttGTTCCTTCTACCAAcgtggctgccgtgacgtcaggtgtAATCAAAGAATTGGGAGACAGACTGGACCCGAGGAATTGAGTCCAAGCATTTTTCGACTTTAATTGGATAATCCGGTTTTATGTTGTCCGTAAAATCCGCGTACACAAGGCGTAACATTTGGAAACAAAGTTATTGGAAATTGCATGAGATCACGAATACACCCACTCATCCCAGCTTTATTCGTCAACCGTTAACGAAGCAAATCCTTGGACCTTTGTACTACCTTTATTATTTGAAGTTTTGTGCGGTTTTAACTATTTACGCTTCGGGGGATGCCACCGGATAGAGTTGCAGTTTTCAGTATTTTATGAAATGTTAACCTAAATAGTACTGTGTTTAAATCACAGAATCCATGTTCAGTCAGAGGACACTAATTAATTTACGTCTTCTTGTTGCAAACCACGCAGCTTTCAATTTCCCTTGCATAAGTCATTTGATAGTCTCATGCTCTGTGTTTATTGTAGACTCAACAGCATAAATAAGTTAAAGAGTGCAGGAAGGAAGTTGCTATGAAATCACTTCGATGGTGTAGTTTTCTTGAGTGTATAATAGAAAAATGGTATGTACTTTTCGCGATGCAGTGtatatggtcactcgtgatctTGTGAAAGTACTCAAAACTGCACGAACCGAAATGCACTCCCGTTCATATGATTTCCGATAGTTATCAGACGCGTTTTGTTTGTTCCATCCTCGAAATGGCGGATTTCGCAACTATTCAGCGAAGTGGAAATGcatggctagtggtggatatttaccgaacCGCGAAGTGAATAGTTGTGAATACCACAAAAAGTTGAtgttaactcatttattcctgcaacgattacaatattttcaggCGCAAGTCCCGTGCGAGTTGCTCAGAGGTGAacagttaacaattattccatgagcgcgcgttggatatgaaagTTTATCGTATAAAGTTAAAAGAACCTCAGTTTTTGCTTTAAAGAGTAAAATGAGCTCTTAATCAAAACCACATGAAATTTTGTACCAGTCCTGGACCAAATGTACTTTGTAAAACTGTCCGTTTCTAAGCGATCATTTaactaaaaagagaaaaacgcaATAGACTTTTTATGGAATTATAGATTTAATGTGCGTGAGTTGAGTAAGAAAATAACTACAAGGTATTTTATCTATTTATAATGTGCTTGTTAAGTATTTTCCTAGGTCACAGttttttataaataaaaaaaagttgaagtttAAACCGTTCATTTTGTCTCAGAGCTGAAATGAAGTTTCTCATTTAGAGAAGTCATAAAAACTGCCTCCACAACTGTCTTTGCCAAAGAAACAACGTTTGatattttcttgtattttatA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NHV4	Protein NEDD1 OS=Homo sapiens OX=9606 GN=NEDD1 PE=1 SV=1
Q3B7M6	Protein NEDD1 OS=Bos taurus OX=9913 GN=NEDD1 PE=2 SV=1
P33215	Protein NEDD1 OS=Mus musculus OX=10090 GN=Nedd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005133 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052818 all species →	Family	NEDD1 Spindle Assembly Protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44414 all species →	PROTEIN NEDD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000242 all species →	Cellular Component	pericentriolar material	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16547	NEDD1; protein NEDD1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068713402.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

16.0Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	5.95	16.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	16.00
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	12.78
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	12.68
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	11.94
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	11.30
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	9.71
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	9.70
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	8.52
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	8.42
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.34
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	8.32
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.26
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	8.22
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	7.99
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	7.66
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	7.59
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	7.32
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	6.49
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	6.48
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	6.20
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	6.14
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	5.76
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	5.46
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	4.32
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	2.90
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	2.56
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	1.49
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	1.42
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.10
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.