Gene detail

Detailed information of XP_068715321.1 in Montipora foliosa

Genomic Location: chr8:37200254...37219781
NR annotation: XP_044178947.1, myeloid differentiation primary response protein MyD88-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068859220.1

CTTGGGCTGCCCCAGGCCATCACGTGATTCAACATGGAGATGTTTGACGCAGAGGCTAAAGTGCGAACCACCCTCGCGTTTTATACGCGCAGCGTCTTCTTTGGTTGAAATCGTCTGAAATTGGTGGATTTGGCTGCAGTTTGTCATGTTTCCGGATCTCTTATGGGACTTTTGACCTGCAAttttatacGATGGAAAGGAAAGGGTCATTGAAAATGAAGGTTATGAAGATGAAGAGAAAATTCAAGCTGAAATCAGGAAGAAAAGAAACTGATAAGCCAGTTGAGCCAAAGCCAGATCAATGCATAATAGAGGGGCCAGAGCCCTTACTGGTCACCATTCATGACAGCATGAAACGCAAGGATGATCCACAGTCTGATGAAACATTGCCTGCTGAGAATTCCCAAGCAGAGGAAGAGTTAACTCCATCTCCAAGTGAAAATGAggaatgcaagaaaaaaagtgCTGACATTGGAGCATTGGATTGCGATGAGAAGCTGATAGAGCATTTACCTCCTGAAGCCAAAAAGGTTTTAGTGGAGTTATTGCAACCACTTTCACATGGAAAAGACTACAGAGGACTGGCAAGCAAACTGGGCTTTGACATGCAGTACATTTATTACCTACAAAGCTTGAACGAACCAGTTACCGTGTTATTAAATGCTATCAAACACAAGAAGATTTCTGAGGTGATTTCAATTTTGGATGACATAGGAAGAAAGGATGCTGCAGAAGACCTTCGTCATTTCAAAGAGTTAACTCCATCTCCAAGTGAAAATGAGGAACGCAAGAAAAAAAGTGATGAGACTAAAACACTTCGTGAGAGTTATGatgctttcctttgttttgcgaaaaatgctACACCAGATAGCAAGTTTGTGAAAGATCTTATAGAAAGAATGGAAGCACCACCATACAATTTACATCTTTGCCGGGCTGACCGTGACTTCCTTGGAGGAGGTTCCTACCATGAAAACACTGCTGTGGTCATTGAAAAAATATGCAAAAAATTTGTGGTTATTTTGTCCCAGAATTTTGAAAAGAGTGAAGGAGCACTCTACGAGTCTCAAATTGCAATAACCCTTTCACCAGGAGCACAGCAGCAGCGCATCATCCCCATTCTTTTAGAAGATGCATACCGTAAAGACATACCAAAGCCAATGGCTCACCTTACATATCTGGATTATCCTCGAGCAGAGGGAGACATACCCAACTTCTGGAATAGATTAGCGCGGTCTTTAGGATGGATACCAAGTCAGAAGTCAAGTAAAACAAGGTGTGCTGTTTCAAGTGAATGTGTTAAATCCAGTACATCAAGGGGCTCGTCAAGGTTCACTGCTAGGATTCGTTTGAGAAAGAGCAAGAAAAAGACGAAATAAGTTGTGTTGATGTGATATATTGAAAGTCAAAGAGGCTCTAGAGGGTTAACCTGATATCAGAGGATTAGCTCTCATCGGCAGAGGTCATTGGTTGGTTTGCTTTAGAGGTACACTCCCGTATGTGGTTAGAAGCGTAATGGAAATATCGTTAGAGATGCAAGGACGCGCTGCATAAAAAGAGGAAGTGAAAGGGCTTGTATCTATAGTTGCACTTGCCACAGTTCTGTTTGCTCTTAAATTGCTAAACAAAGACAAGCACATTAGTTAACAGAAATTAAGACCATTTTACTCTGTTCAGGTCTTCGTCACCTCATACTTTTTGTGCTTGCGTCTACGTCTGTGGGCTTGCAGTCTTCTCTGAACAGGCTCTTGAACATTAGACGCCGTTTCAAGGAGTTGCTTCAACCCCTGCTTTTGTGCCAGATGGTGGAAAGTGCCGGTTAGGGTTttaggtcattgttttaccataactgagaCAACCCAACCCTTTACAAAAacgctaaccttaggcttaaacattatctaGAGCATagtatttaggcctaatttaaGCATTAATAGAgctttgggttgtttcagctacgGTGAAACAACAATCTGCTGCTGTAGTTTACACCGGGCTCCACTTTTGTGCCAAATTCATCCAACCATAGCTGTTAATTCAACATGGTGATCGACATTCGTAGCTAGGAAAACAGAAATAGaagttgtatttttttgttgttgtgataAAAGTGATCTCAAAAACAAGATAATGGTGTaacattttgtaaatatttttaggGTGAACATATCGCCAACAAGGGCTCTTCTTATTGCAcaagttttaaaacgagttCTTATGCATTCCTGGTGTAAAATGATTGATATTTCATTCACACTTGTTTTAAGGTGTCATGCTTTTATAGCCAGTCCATGTTTCGTGCTTAAGATCTAAGTAGCTACGAAAATCAATCGATACTCTAatttttgctatttatattGCATCACATCATGGAATACTTAAATTACACTTGGCCTttcaaaaattataataaagatCGGCCTAAAGTTActttaaaaaacaatttgattttttgtttttgtttagacttttttttgcaaaattcaaATTGTTTTATAGAATTTTTGGCCGCTGTCTTCTTGTTTGTGTTGTTTAGTCATGGTCAGGGCTTTCAATGAAATTTGGTTTGAGTAGACTAACAAATTGTTAAAAGGAATTTTTATCTTAGGCTTGAAAGAACCTGTCTTTGATTACTTCAATTTCGGGGGGAAAAGTAGCTGACTTTTCTGAGTGAAGCACGCGGCGCTTCGGTCTGCAGTCTGTACTTACTGAAACCACTGCATTGTACAAAGCTTGTACAGAACACTTTTTGTAGATCTAAGAGCAGTACACTATAGGGGATAGTTGTATGCTGTCATGATATGTAATGTTTTAGAAACACGAGAATACATTTATTCAACCATTTTTAACATACTTGaagcattgttttctttgtttgataaCAAACGATAGGGTGATAGGTATTTAGATGGTGGTTTGCAGGCAGCTCAAACGCAGAACTTGAATGCTTCTTGGATAATCTATAAGATAACAAGAAAATAAGATATAAGATATAAGATGGCAAGAAAATCTGTTAATCTTGCCCAAAAGCAAAGAAGTGTATGAAAATACAGTTACTTTCCCTGCATTTTGTGTTCTTTTATTCGTTGTAGGCGGCCAGGTTTGGTTTTGCTGTCCTGTTTTTACCATCAGTTCATTAAGTGAGGACAGCGAAGCTAGTGTTGATTACAGAAAAGAGACACGAGAACACGTCAGCTTGTTTtatatcttttttccttttatgcTAAGGCTAGCGGATATCGtaacttttaaaaactttttgtttgatttcttGCTGAACCTAATGAATTGATCTTTATGCCAACAATGCATGAAATTAAGAGTTTGAGCTAAGAGAACATACTTTGTTGAAGACATAGTGTcctattcatttttttttttttcgaagatTTCTTGTGGCAAGAGAAGTCGAGATGTGCAGCAGCCTTTAAATATTTAGTGTACCAACACGAaaactttttttaatgttttcttgTACCTGGTTtctgttcattttttttggtaacTTACACTTTCTTGACATTTGGTGTACGCCTGCAGAAGTGTGTGTGGCcgtatttcttttgttttaacttAAATATACAAAATTTTTAATTGACCTGGTGGAAAGCATTGAATATGGTTTTAGCTAGAAAGCTGACCTTTCTTCAAGGCCACTCCAACAGTAATTACTGGCCAAGGTTGATGTGTGTGAATGTGCTCAGATTTCATcaacagttttattttttttgggtGTCAGGCCATAAAGTTAAGTCTAGACAACTTTGGAGAAGAAAGTAATGGACTAGAAAAGCTTAATGTGGTTCTTTTAAGCCAACTTTTAGCAGACAGAAGTACTAGTAAATACTTTCCATTGCATTGTATTTTATTCCGTATGCACGTAGTTGTTGGTTTCCTATTTGTATCACATTGAAGTAATTAAAGGGAACTCAAAACACA

Protein

Uniprot

Uniprot term	Description
Q4LBC6	Myeloid differentiation primary response protein MyD88 OS=Oncorhynchus mykiss OX=8022 GN=myd88 PE=2 SV=1
B3SRQ2	Myeloid differentiation primary response protein MyD88 OS=Salmo salar OX=8030 GN=myd88 PE=2 SV=1
A8QMS7	Myeloid differentiation primary response protein MyD88 OS=Takifugu rubripes OX=31033 GN=myd88 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF01582	TIR	TIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04729	MYD88; myeloid differentiation primary response protein MyD88	-	Alcoholic liver disease	ko04936	deepkoala