Gene detail

Detailed information of XP_068715323.1 in Montipora foliosa

Genomic Location: chr8:37200254...37219791
NR annotation: XP_044178951.1, myeloid differentiation primary response protein MyD88-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068859222.1

CGCTTGAATGCTTGGGCTGCCCCAGGCCATCACGTGATTCAACATGGAGATGTTTGACGCAGAGGCTAAAGTGCGAACCACCCTCGCGTTTTATACGCGCAGCGTCTTCTTTGGTTGAAATCGTCTGAAATTGGTGGATTTGGCTGCAGTTTGTCATGTTTCCGGATCTCTTATGGGACTTTTGACCTGCAAttttatacGATGGAAAGGAAAGGGTCATTGAAAATGAAGGTTATGAAGATGAAGAGAAAATTCAAGCTGAAATCAGGAAGAAAAGAAACTGATAAGCCAGTTGAGCCAAAGCCAGATCAATGCATAATAGAGGGGCCAGAGCCCTTACTGGTCACCATTCATGACAGCATGAAACGCAAGGATGATCCACAGTCTGATGAAACATTGCCTGCTGAGAATTCCCAAGCAGAGGAAGAGTTAACTCCATCTCCAAGTGAAAATGAggaatgcaagaaaaaaagtgCTGACATTGGAGCATTGGATTGCGATGAGAAGCTGATAGAGCATTTACCTCCTGAAGCCAAAAAGGTTTTAGTGGAGTTATTGCAACCACTTTCACATGGAAAAGACTACAGAGGACTGGCAAGCAAACTGGGCTTTGACATGCAGTACATTTATTACCTACAAAGCTTGAACGAACCAGTTACCGTGTTATTAAATGCTATCAAACACAAGAAGATTTCTGAGGTGATTTCAATTTTGGATGACATAGGAAGAAAGGATGCTGCAGAAGACCTTCGTCATTTCAAAGAGTTAACTCCATCTCCAAGTGAAAATGAGGAACGCAAGAAAAAAAGTGATGAGACTAAAACACTTCGTGAGAGTTATGatgctttcctttgttttgcgaaaaatgctACACCAGATAGCAAGTTTGTGAAAGATCTTATAGAAAGAATGGAAGCACCACCATACAATTTACATCTTTGCCGGGCTGACCGTGACTTCCTTGGAGGAGGTTCCTACCATGAAAACACTGCTGTGGTCATTGAAAAAATATGCAAAAAATTTGTGGTTATTTTGTCCCAGAATTTTGAAAAGAGTGAAGGAGCACTCTACGAGTCTCAAATTGCAATAACCCTTTCACCAGGAGCACAGCAGCAGCGCATCATCCCCATTCTTTTAGAAGATGCATACCGTAAAGACATACCAAAGCCAATGGCTCACCTTACATATCTGGATTATCCTCGAGCAGAGGGAGACATACCCAACTTCTGGAATAGATTAGCGCGGTCTTTAGGATGGATACCAAGTCAGAAGTCAAGTAAAACAAGTAACTGATCCCGAGGGTGTGCTGTTTCAAGTGAATGTGTTAAATCCAGTACATCAAGGGGCTCGTCAAGGTTCACTGCTAGGATTCGTTTGAGAAAGAGCAAGAAAAAGACGAAATAAGTTGTGTTGATGTGATATATTGAAAGTCAAAGAGGCTCTAGAGGGTTAACCTGATATCAGAGGATTAGCTCTCATCGGCAGAGGTCATTGGTTGGTTTGCTTTAGAGGTACACTCCCGTATGTGGTTAGAAGCGTAATGGAAATATCGTTAGAGATGCAAGGACGCGCTGCATAAAAAGAGGAAGTGAAAGGGCTTGTATCTATAGTTGCACTTGCCACAGTTCTGTTTGCTCTTAAATTGCTAAACAAAGACAAGCACATTAGTTAACAGAAATTAAGACCATTTTACTCTGTTCAGGTCTTCGTCACCTCATACTTTTTGTGCTTGCGTCTACGTCTGTGGGCTTGCAGTCTTCTCTGAACAGGCTCTTGAACATTAGACGCCGTTTCAAGGAGTTGCTTCAACCCCTGCTTTTGTGCCAGATGGTGGAAAGTGCCGGTTAGGGTTttaggtcattgttttaccataactgagaCAACCCAACCCTTTACAAAAacgctaaccttaggcttaaacattatctaGAGCATagtatttaggcctaatttaaGCATTAATAGAgctttgggttgtttcagctacgGTGAAACAACAATCTGCTGCTGTAGTTTACACCGGGCTCCACTTTTGTGCCAAATTCATCCAACCATAGCTGTTAATTCAACATGGTGATCGACATTCGTAGCTAGGAAAACAGAAATAGaagttgtatttttttgttgttgtgataAAAGTGATCTCAAAAACAAGATAATGGTGTaacattttgtaaatatttttaggGTGAACATATCGCCAACAAGGGCTCTTCTTATTGCAcaagttttaaaacgagttCTTATGCATTCCTGGTGTAAAATGATTGATATTTCATTCACACTTGTTTTAAGGTGTCATGCTTTTATAGCCAGTCCATGTTTCGTGCTTAAGATCTAAGTAGCTACGAAAATCAATCGATACTCTAatttttgctatttatattGCATCACATCATGGAATACTTAAATTACACTTGGCCTttcaaaaattataataaagatCGGCCTAAAGTTActttaaaaaacaatttgattttttgtttttgtttagacttttttttgcaaaattcaaATTGTTTTATAGAATTTTTGGCCGCTGTCTTCTTGTTTGTGTTGTTTAGTCATGGTCAGGGCTTTCAATGAAATTTGGTTTGAGTAGACTAACAAATTGTTAAAAGGAATTTTTATCTTAGGCTTGAAAGAACCTGTCTTTGATTACTTCAATTTCGGGGGGAAAAGTAGCTGACTTTTCTGAGTGAAGCACGCGGCGCTTCGGTCTGCAGTCTGTACTTACTGAAACCACTGCATTGTACAAAGCTTGTACAGAACACTTTTTGTAGATCTAAGAGCAGTACACTATAGGGGATAGTTGTATGCTGTCATGATATGTAATGTTTTAGAAACACGAGAATACATTTATTCAACCATTTTTAACATACTTGaagcattgttttctttgtttgataaCAAACGATAGGGTGATAGGTATTTAGATGGTGGTTTGCAGGCAGCTCAAACGCAGAACTTGAATGCTTCTTGGATAATCTATAAGATAACAAGAAAATAAGATATAAGATATAAGATGGCAAGAAAATCTGTTAATCTTGCCCAAAAGCAAAGAAGTGTATGAAAATACAGTTACTTTCCCTGCATTTTGTGTTCTTTTATTCGTTGTAGGCGGCCAGGTTTGGTTTTGCTGTCCTGTTTTTACCATCAGTTCATTAAGTGAGGACAGCGAAGCTAGTGTTGATTACAGAAAAGAGACACGAGAACACGTCAGCTTGTTTtatatcttttttccttttatgcTAAGGCTAGCGGATATCGtaacttttaaaaactttttgtttgatttcttGCTGAACCTAATGAATTGATCTTTATGCCAACAATGCATGAAATTAAGAGTTTGAGCTAAGAGAACATACTTTGTTGAAGACATAGTGTcctattcatttttttttttttcgaagatTTCTTGTGGCAAGAGAAGTCGAGATGTGCAGCAGCCTTTAAATATTTAGTGTACCAACACGAaaactttttttaatgttttcttgTACCTGGTTtctgttcattttttttggtaacTTACACTTTCTTGACATTTGGTGTACGCCTGCAGAAGTGTGTGTGGCcgtatttcttttgttttaacttAAATATACAAAATTTTTAATTGACCTGGTGGAAAGCATTGAATATGGTTTTAGCTAGAAAGCTGACCTTTCTTCAAGGCCACTCCAACAGTAATTACTGGCCAAGGTTGATGTGTGTGAATGTGCTCAGATTTCATcaacagttttattttttttgggtGTCAGGCCATAAAGTTAAGTCTAGACAACTTTGGAGAAGAAAGTAATGGACTAGAAAAGCTTAATGTGGTTCTTTTAAGCCAACTTTTAGCAGACAGAAGTACTAGTAAATACTTTCCATTGCATTGTATTTTATTCCGTATGCACGTAGTTGTTGGTTTCCTATTTGTATCACATTGAAGTAATTAAAGGGAACTCAAAACACA

Protein

Uniprot

Uniprot term	Description
Q4LBC6	Myeloid differentiation primary response protein MyD88 OS=Oncorhynchus mykiss OX=8022 GN=myd88 PE=2 SV=1
B3SRQ2	Myeloid differentiation primary response protein MyD88 OS=Salmo salar OX=8030 GN=myd88 PE=2 SV=1
A8QMS7	Myeloid differentiation primary response protein MyD88 OS=Takifugu rubripes OX=31033 GN=myd88 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582	TIR	TIR domain	Family	Interproscan
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan