Gene detail

Detailed information of XP_068716927.1 in Montipora capricornis

Genomic Location: chr8:16537273...16614369
NR annotation: XP_044184421.1, chromosome transmission fidelity protein 18 homolog isoform X4 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138013754

ATGGATATCTGGGATATCCAAGAACAAGATGAATTCGAATCTCGCTACGCGGATGAACTGGAAATGTTGGATGGTTTGGAAGAAGAAGAATCCACTCCAGTGTCAAAGAGGAGCCTCAATTTTGACAGGGAGAAGACAGCTGACAATGGAATGACAGGGAATGGTGTACCTATGAATCAAAATCGTGTGAAAAAACGAGACTGCAATGAAATGTCCGTACTCCTTTCTGATGTTGAAGAATCAATCCTTGATGACTCTGATTTTGTTTCAGGTCCCTGCAAAAAGAGAGCTCGTCTTAGTCCCCTGCAAAACAGCAAAGACCATGATGTGAGCCGTCAACTGCCAAAACCTGGATGTGTAAAAAGTCCATTACGACAACTTCAGTCAAGCCCTTTGCAGTCTCACGATTCTACAAGTATTGACAGAAAGATATTATCAAATCCAGAGAGATTTAAGGTGTTCCGAAGGCCTCCAATGAGCTGCGAGGCTGTTTCCATAACAAGAATGGATGGACAGAGGCTTTACCTGTCCATCAAAGCTGACAAGGAAGTATCAGTAAAGGCAAAGGGACTGAATAGGACGCTATTCAGAGGAGGAACCTCACTTCAGCTTTTGTCTATGCCTTTTTCTGTTCTACAGGAACATGTTCAGGATGAGAGAAGAAGGAGGGTAATGGAAGAATCTGAAAAGTTGACAGCATCTTTAAACAGCATGCTTAATGAGAACTCAGATGTTGCAGAAGTCGAGCACATGCTGCATTTTAATGGCACTGAAATCAACAAAGAAGAGGAGAAGCTGGCTCAGTATGCTCTATGGGTGGAAAAATATACCCCAAGATACTTCACTGAACTGCTTAGTGATGACGCTATCAATCGAACATTACTGAAATGGTTGAAACTTTGGGATAAAGTTGTATTTGGTAAGGGACAGGACAAGGAAAACAAGGGAAGACCTGAGCAGACTAAAAAACCGAAACCAAACTTCGCAAAAAACTATAAAAAGCAAGGAAGTGGAGTCCAAGAAGAAGGGGACTGGAAGGAAATTGATGTAACTGGTCGTCCTGTTTATAAGGTGGCACTGCTTTGTGGTCCCCCTGGTCTTGGTAAAACCACCCTTGCCCATGTTATTGCTCGACATGCTGGATACAATGTAGTGGAGATGAATGCAAGTGACGATCGATCCCAGGAGATTTTCAGGAACACTCTTGAGGCATCAACGCAGATGAAGTCTGTCCTAGGACACAATGAAAAGCCAAACTGCTTAGTTATTGATGAAATAGATGGAGCACCAGCGCCAGCCATTAATGTTCTGTTATCTGTTATCAAACAAAAGGAGTCAGGCCAAGTTGAAATCGAAAGAACAGATGATGTAGCAAAGGTCGACATAGTGACAGCTATAAGAACGGATCACAGTGCAATAACCTTAGAAATCGATAGTCTGGATGATCAGCAGCGTGGCCCATCTTTTTGGAAATTCAACAACAATCTCTTAGATGACGCTTTGTTTGTTCAGCGTTTATGTGAAAATTTTCCAATATGGCTCGATGAAATGAGTTTCTGTGTTGATCTGAGAATTAAATGGGATTGGATAAAATTCAAAATTTGCGAGGAAAGTATATCTTTTAGTAAATTGAAAGCTCAAGAAAGGAGAAGGAAAATCCAAACAATTGAAAATAGGCTTAAAATATGCGAAGAGAGAATTACACAATCACCAACGCAAGAAAATCTTGCCAACCTGGAATCGGCTAAAGCAGAGTACGAAAAAGAATATGACTGCATTACTCCGAATATACTTGCTGAGCTCGGTTACATTTTTGTACCGTTCGTGCCTGAAAACGCCGTGTTCGTCATTCAGAGATCCGCTCTAAAACACAGAGATGACTGGCTGGTTACACATCTCGGTTCCTTTGACAACGAAGGCCAAAGTGGAAGAGTCTTTAAAGTGGAGGGCGAAGAAGTTATATCAACAAAACAGTGGCCAAGAAGAGTGGAAGAAAGATTTCGGTTGGAGGATGACGAGTATCTTGTTCTAAGCACTTGCTGGAGGCACGCAAAGTACAAGGATTTCTCTCGAATCACAACGGTTGTGTCGCAGAAACATAACAAGGAACTTGACCTTGTCTTGGTCCAGTACTATTTCCAAGGAAACGAGCACCACATCAGCCCAAAGAAACATCCTAGATCGCAACGACCTTTCATTCCTACAGCCTCAAGAACGAGAAATTCCATAGTCGAGAAATTAAAAAAGCCAATGGGACCTTCAGCCATTTAA

Transcript

rna-XM_068860826.1

TTTCGTCCCAAAATGGCGGAGTGAATATTGGATCAGTCAGCGCTGTGCAGATCGACGTACAAAAAGCGCTGCTTTTGGCGGGCCTGTCCTTCGAAATGGATATCTGGGATATCCAAGAACAAGATGAATTCGAATCTCGCTACGCGGATGAACTGGAAATGTTGGATGGTTTGGAAGAAGAAGAATCCACTCCAGTGTCAAAGAGGAGCCTCAATTTTGACAGGGAGAAGACAGCTGACAATGGAATGACAGGGAATGGTGTACCTATGAATCAAAATCGTGTGAAAAAACGAGACTGCAATGAAATGTCCGTACTCCTTTCTGATGTTGAAGAATCAATCCTTGATGACTCTGATTTTGTTTCAGGTCCCTGCAAAAAGAGAGCTCGTCTTAGTCCcctgcaaaacagcaaagaccaTGATGTGAGCCGTCAACTGCCAAAACCTGGATGTGTAAAAAGTCCATTACGACAACTTCAGTCAAGCCCTTTGCAGTCTCACGATTCTACAAGTATTGACAGAAAGATATTATCAAATCCAGAGAGATTTAAGGTGTTCCGAAGGCCTCCAATGAGCTGCGAGGCTGTTTCCATAACAAGAATGGATGGACAGAGGCTTTACCTGTCCATCAAAGCTGACAAGGAAGTATCAGTAAAGGCAAAGGGACTGAATAGGACGCTATTCAGAGGAGGAACCTCACTTCAGCTTTTGTCTATGCCTTTTTCTGTTCTACAGGAACATGTTCAGGATGAGAGAAGAAGGAGGGTAATGGAAGAATCTGAAAAGTTGACAGCATCTTTAAACAGCATGCTTAATGAGAACTCAGATGTTGCAGAAGTCGAGCACATGCTGCATTTTAATggcactgaaatcaacaaagaaGAGGAGAAGCTGGCTCAGTATGCTCTATGGGTGGAAAAATATACCCCAAGATACTTCACTGAACTGCTTAGTGATGACGCTATCAATCGAACATTACTGAAATGGTTGAAACTTTGGGATAAAGTTGTATTTGGTAAGGGACAGGACAAGGAAAACAAGGGAAGACCTGAGCAGACTAAAAAACCGAAACCAAACTTCGCAAAAAACTATAAAAAGCAAGGAAGTGGAGTCCAAGAAGAAGGGGACTGGAAGGAAATTGATGTAACTGGTCGTCCTGTTTATAAGGTGGCACTGCTTTGTGGTCCCCCTGGTCTTGGTAAAACCACCCTTGCCCATGTTATTGCTCGACATGCTGGATACAATGTAGTGGAGATGAATGCAAGTGACGATCGATCCCAGGAGATTTTCAGGAACACTCTTGAGGCATCAACGCAGATGAAGTCTGTCCTAGGACACAATGAAAAGCCAAACTGCTTAGTTATTGATGAAATAGATGGAGCACCAGCGccaGCCATTAATGTTCTGTTATCTGTTATCAAACAAAAGGAGTCAGGCCAAGTTGAAatcgaaagaacaGATGATGTAGCAAAGGTCGACATAGTGACAGCTATAAGAACGGATCACAGTGCAATAACCTTAGAAATCGATAGTCTGGATGATCAGCAGCGTGGCCCATCTTTTTGGAAATTCAACAACAATCTCTTAGATGACGCTTTGTTTGTTCAGCGTTTATGTGAAAATTTTCCAATATGGCTCGATGAAATGAGTTTCTGTGTTGATCTGAGAATTAAATGGGATtggataaaattcaaaatttgcgAGGAAAGTATATCTtttagtaaattgaaagctcaAGAAAGGAGAAGGAAAATCCAAACAATTGAAAATAGGCTTAAAATATGCGAAGAGAGAATTACACAATCACCAACGCAAGAAAATCTTGCCAACCTGGAATCGGCTAAAGCAGAGTACGAAAAAGAATATGACTGCATTACTCCGAATATACTTGCTGAGCTCGGTTACATTTTTGTACCGTTCGTGCCTGAAAACGCCGTGTTCGTCATTCAGAGATCCGCTCTAAAACACAGAGATGACTGGCTGGTTACACATCTCGGTTCCTTTGACAACGAAGGCCAAAGTGGAAGAGTCTTTAAAGTGGAGGGCGAAGAAGTTATATCAACAAAACAGTGGCCAAGAAGAGTGGAAGAAAGATTTCGGTTGGAGGATGACGAGTATCTTGTTCTAAGCACTTGCTGGAGGCACGCAAAGTACAAGGATTTCTCTCGAATCACAACGGTTGTGTCGCAGAAACATAACAAGGAACTTGACCTTGTCTTGGTCCAGTACTATTTCCAAGGAAACGAGCACCACATCAGCCCAAAGAAACATCCTAGATCGCAACGACCTTTCATTCCTACAGCCTCAAGAACGAGAAATTCCATAGtcgagaaattaaaaaagccaATGGGACCTTCAGCCATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NU40	Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis OX=8355 GN=chtf18 PE=2 SV=1
Q8BIW9	Chromosome transmission fidelity protein 18 homolog OS=Mus musculus OX=10090 GN=Chtf18 PE=1 SV=2
Q8WVB6	Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens OX=9606 GN=CHTF18 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003252 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR053016 all species →	Family	CTF18-RFC complex component	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46765 all species →	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068716927.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068716927.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

26TPM > 0

1Conditions

6.9Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	26	1.33	6.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	6.94
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.21
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.75
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	3.71
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	3.66
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.85
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	2.06
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.94
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.87
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	1.57
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.50
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	1.49
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.43
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.36
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.22
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.03
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.93
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.92
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.91
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.86
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.74
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.72
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.69
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.67
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.61
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.41
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.