Detailed information of XP_068717954.1 in Montipora capricornis

Genomic Location: chr9:31799760...31842212
NR annotation: XP_044176925.1, TPR and ankyrin repeat-containing protein 1-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O15050TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4
Q8BV79TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000890 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00580
all species →
UvrD-helicaseUvrD/REP helicase N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR039904
all species →
FamilyTPR and ankyrin repeat-containing protein 1Interproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR014016
all species →
DomainUvrD-like helicase, ATP-binding domainInterproscan
IPR013986
all species →
Homologous_superfamilyDExx box DNA helicase domain superfamilyInterproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21529
all species →
MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_068717954.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068717954.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
27TPM > 0
1Conditions
21.9Max TPM
2.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 27 2.66 21.92

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP