Gene detail

Detailed information of XP_068718148.1 in Montipora capricornis

Genomic Location: chr9:28086972...28123274
NR annotation: CAH3184987.1, unnamed protein product, partial [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138015125

ATGAAGATCATTATTGTCTGTTTTCTGGCGTTCCAGACAGCTACTCCTCGCGTTTGTCGAGAGGATCAGTATGCCATTAAGTTGCCCAACCGCAAGAAACCTTTTTGTATGACTTGTCCGAAGTGCCCTCCAGGCTCTGGCTCCACAGTACCTTGTGGGACTACTATCCCTACACGTTTCAACGCCTCCGAAATTTGTAAACCTTGTACTGTTGGGGAATACTCTGATTCCTTTTCTTCGGAGAGTTGCAAGACCTGCTCGAAGTGTCTACCTAATGAAATCGTCGAGGCCGATTGCACCAGTATTTCCGATACACGATGTAGCTGCGAGCCTTGCCCGAAGGGGTTTTATCGTAATGAAACAACATTTCATTGCCTGCCTTGTTCGGAGTGTGTAAAAGGTATAAACGAAAAAGTTGAGCAGTGCGCCCGTCAAAAGATATCTGGTGCTCAAATCTGTGGCTACCGGAAAAGAAAACTCAGTGGCCCAAACTGTTGGTACGATGAGATAACAGTTTTAAAGCGTAATGGAAAGCACAGCTGTCAGGCCTGCCCAGTTTGTTCCAAAGTTAGTGGCCTTACTGTACCTTGTGGAAGTATTGTTCGCGAAGGAATCTCTATTGCGTGTAAAAGGCCTACGGATGGAACAACCTTTGTGGACAAAGATGGGGTCCTAAGGCCATGTAGTGTTTGCTCTCCTGATCAAGAGGTGATCCGAAACTGTTCGTCTCACTTCGATACCCAGTGCGGTCGTTGCAAACAAGGTTTCTTTTATAATTCGTATTCGAAGACTTGTCAGGAGTGCTTTTCGTGTTGTAATCATATTAGCAGTGACGACATCATAAACTGCATCAGGAAACGAATGTCTTTCGCCACCCTTCATGATGACTTGCTTCGATCTCCAAGAATATCTGTGCAATTACTTTCCCATTCTGCCCGAGATGACTATGAATATTCTTCCTTATGGAGTTTTATGCTCGCTGCATTAGAATACATGTTACCTTTAGGCTTTAGTTTCTATTTTGCCGCAAATTTAGCCTCTCAGTGGAGATATTATTCAAAGAAACTACAACGCAGAGACTTTCAGGTTCACAATTTTGACGAAGTAAAATGTAATCCACTTCACCAAGAACGCAAGTCTAAAATCACAGTGGCAGCTTTTCAAGATACATCTGTTGGTACCGAAAGTGTGACGCCGGAATATCCCGTGCGGAAAAGTCCTTGTCATATGATTTTCGAAAAGACTGGTGTGGAAGTTTTAGCTCCAGCAGATGGAACGAAATCCGTCTTGCCAAATGACATGATTTTGAGAGCCTCATCAAACTCAACTGAACCCGGCTTTCTTGAACAAGGTGAAATATCATTAAGTCCAGCCATTGCATTAAGTGTTCCGACGAAGTTGGAGAGACGAGTTGAAGTGCAGATACCACATGGAGCAAACTTGATTCTTTCGCAAGAGGATTGGAATGTCATTCTGAAAGCTGTTCGAAACGACCGATGGGTTAATTTGAGCCAGGATAGAACCGGAGATCAGGGAATAAGTAATTTCGTTGCTAAAAGCAATCATGTGAGCTTTGAGACCGATCGTCTTTCAAAATTTGCAGTGGTTGGGAAGCTTAACGAGCATTCTTTGTCAGCCCTCAAGAGAATGAAGGTTGCTGCATTTTGCAACGAAACCAACGTTGGAGAAAACCTTGTTGTGAGGGTCTATTGTTTTGATGATTGCGAATATTCATTTGAGAGGCTGAAGATGGAGGAAAGTGACAAAGGAGGAAAACTGATCTCATCGATTGAATCTGTGGACTTCTCTGTTGGCAGTGGTAAGGACGTGGAGATAAATGTTAAAGATACTCGAGGCTGGCAGCTTGACCCATCGTCAACAACGAAAATAGGCTACAAGTCGCTGAGGAATTCATTCGACATTATTCCCAATTGTAAATTGGTTTTTCAACCAACTGCAGAACGAAAGACCACCTTTTTTGCTCTGATGAATGTGACCCACGAGCCATTCTTTCAAACAATGGTGTACGCGAGTACTGCATTGAAATGA

Transcript

rna-XM_068862047.1

CGAAAGTAATGATGAAGGAAGCTAGCGAGTCATCTTCATTGTGAAAAGCATCACAAACTTAGTGCCTTTAGGTAACTTGAAGTTTCGGTTAGATGATCAATCAGTAATTCCTCATGTTCTGTTTTTTCTGAAAGTATTGGTGTCCGTGCGTTgatcttgtgattggtcagcAATTTCTCTTGGGGAAACCCCTGTTTCGAACAGCGTGACCCACTCTTATAGTTTGAAATTATTCAGTTACTGTTTTCTTGTGTTCATTTCGCATAAAAATCCGTGGATCCGTTGTAACTAGACCATTGAATACGAAGGAAAGACGAAGGAAATGAAGATCATTATTGTCTGTTTTCTGGCGTTCCAGACAGCTACTCCTCGCGTTTGTCGAGAGGATCAGTATGCCATTAAGTTGCCCAACCGCAAGAAACCTTTTTGTATGACTTGTCCGAAGTGCCCTCCAGGCTCTGGCTCCACAGTACCTTGTGGGACTACTATCCCTACACGTTTCAACGCCTCCGAAATTTGTAAACCTTGTACTGTTGGGGAATACTCTGATTCCTTTTCTTCGGAGAGTTGCAAGACCTGCTCGAAGTGTCTACCTAATGAAATCGTCGAGGCCGATTGCACCAGTATTTCCGATACACGATGTAGCTGCGAGCCTTGCCCGAAGGGGTTTTATCGTAATGAAACAACATTTCATTGCCTGCCTTGTTCGGAGTGTGTAAAAGGTATAAACGAAAAAGTTGAGCAGTGCGCCCGTCAAAAGATATCTGGTGCTCAAATCTGTGGCTACCGGAAAAGAAAACTCAGTGGCCCAAACTGTTGGTACGATGAGATAACAGTTTTAAAGCGTAATGGAAAGCACAGCTGTCAGGCCTGCCCAGTTTGTTCCAAAGTTAGTGGCCTTACTGTACCTTGTGGAAGTATTGTTCGCGAAGGAATCTCTATTGCGTGTAAAAGGCCTACGGATGGAACAACCTTTGTGGACAAAGATGGGGTCCTAAGGCCATGTAGTGTTTGCTCTCCTGATCAAGAGGTGATCCGAAACTGTTCGTCTCACTTCGATACCCAGTGCGGTCGTTGCAAACAAGGTTTCTTTTATAATTCGTATTCGAAGACTTGTCAGGAGTGCTTTTCGTGTTGTAATCATATTAGCAGTGACGACATCATAAACTGCATCAGGAAACGAATGTCTTTCGCCACCCTTCATGATGACTTGCTTCGATCTCCAAGAATATCTGTGCAATTACTTTCCCATTCTGCCCGAGATGACTATGAATATTCTTCCTTATGGAGTTTTATGCTCGCTGCATTAGAATACATGTTACCTTTAGGCTTTAGTTTCTATTTTGCCGCAAATTTAGCCTCTCAGTGGAGATATTATTCAAAGAAACTACAACGCAGAGACTTTCAGGTTCACAATTTTGACGAAGTAAAATGTAATCCACTTCACCAAGAACGCAAGTCTAAAATCACAGTGGCAGCTTTTCAAGATACATCTGTTGGTACCGAAAGTGTGACGCCGGAATATCCCGTGCGGAAAAGTCCTTGTCATATGATTTTCGAAAAGACTGGTGTGGAAGTTTTAGCTCCAGCAGATGGAACGAAATCCGTCTTGCCAAATGACATGATTTTGAGAGCCTCATCAAACTCAACTGAACCCGGCTTTCTTGAACAAGGTGAAATATCATTAAGTCCAGCCATTGCATTAAGTGTTCCGACGAAGTTGGAGAGACGAGTTGAAGTGCAGATACCACATGGAGCAAACTTGATTCTTTCGCAAGAGGATTGGAATGTCATTCTGAAAGCTGTTCGAAACGACCGATGGGTTAATTTGAGCCAGGATAGAACCGGAGATCAGGGAATAAGTAATTTCGTTGCTAAAAGCAATCATGTGAGCTTTGAGACCGATCGTCTTTCAAAATTTGCAGTGGTTGGGAAGCTTAACGAGCATTCTTTGTCAGCCCTCAAGAGAATGAAGGTTGCTGCATTTTGCAACGAAACCAACGTTGGAGAAAACCTTGTTGTGAGGGTCTATTGTTTTGATGATTGCGAATATTCATTTGAGAGGCTGAAGATGGAGGAAAGTGACAAAGGAGGAAAACTGATCTCATCGATTGAATCTGTGGACTTCTCTGTTGGCAGTGGTAAGGACGTGGAGATAAATGTTAAAGATACTCGAGGCTGGCAGCTTGACCCATCGTCAACAACGAAAATAGGCTACAAGTCGCTGAGGAATTCATTCGACATTATTCCCAATTGTAAATTGGTTTTTCAACCAACTGCAGAACGAAAGACCACCTTTTTTGCTCTGATGAATGTGACCCACGAGCCATTCTTTCAAACAATGGTGTACGCGAGTACTGCATTGAAATGAGGGGATTTTAAAGATGCTTTGAGAATTAATGAAAACACAACACGAGGAGAAAAAGAGCCATTGGAATCAACCCAAACGAAAAACAGAGAAATGCGAAATTCAGATCACCTCGTGGAGTTAGGATTAATCAAGAATTAAACACCATTATCACCCTGTGAACTAGATGAACAACTTTATGGCAATGTATTTCATTTTCTAGGTAATTTTTTTAAGGTTCGAATAAAAGTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003054 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan
IPR052302 all species →	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605 all species →	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005035 all species →	Molecular Function	death receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0015026 all species →	Molecular Function	coreceptor activity	Interproscan
GO:0048406 all species →	Molecular Function	nerve growth factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068718148.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.