Gene detail

Detailed information of XP_068718294.1 in Montipora capricornis

Genomic Location: chr9:42689181...42697196
NR annotation: XP_015771738.1, PREDICTED: protein Spindly-B-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138015228

ATGGCGGAATTGGAAAATGAGCAGTATTTTCTTAAAGAAGGATTACTTCGATTAAAGGAAGAAAACGAGGCACTGCAAAAGGATTTAGAATTAGCTGGAGAATTGGGCAAAAGTCTCCTTGAAAATAACCACGAATTGGAGAGAAAACTCGATGAAGTCAACTCGGAGTACGTTTGTTCACTGGAAAAAATCGAGGAACTTAAACAAGACAATCACACCTTGCGAACTCGGTTAGATACTGAAGTTCGCACGAACTCAAACCACACACACGAATTGGAGGATTTGAAAGAAAAACTTCGGAAGGAATTTGAAGGAAAGGAAAAATCACAACAACTTACGACGGAAAAAAAGATCAACGATCTGAGAAAGGAGATCGAATCTTTGCAGAATGATGCTAGCAAACACGCAATGGTTGAAAATCAACTGCAAGAGAAGATAAAAAAACAAGAGGAAATGCTAAGAAAAGCGCATCAAAGCAACGAGGAGCTGCAAAAGAAGGGAATGTCGAGACTGGAGAACGTTGAGGAATACATCAATCTTGCCTCGGAACTGAAGGAAGAAAGAGACGTTTTGATGATGAAGATAGCAGACTACGAAGATAATCAAGAGAGGATTGCTTTCGACCGAAACACGCTGAAGGAAAGATTTGAGCATTTGGAAGAGGAATTACAAGAGAAGACACGGCAAGCTCATACATGGTTTAACTGTTTGCAGGAAGCTCGCCTGGAGGCTGGTGAATTCAAAGCTGAGCTGGAGAACCTCAAGGCTGAAAATGCAAGGCGAAACTTTGGAAAACAAGGAAATTCTTTGTTTGGAGAGGTTGAAGACAGGCGATTGGAACTTGAAAAGAAATATGGGAGTTTACAAGCAAGGCACGAAAACATGGTCAAAATACACAACATGACAAAACAGCATTTGCAGAGGCTGAAGAATCAGGTGGCAACCCTTCTTCAAGTGAAGAGCTGTCACGCGGATGCGTCTCAGATTCAAAGACTGACCCACGCTTTGGTGCAAAAAGAAGGAGAGATTAAAATATTGAACGCGAAAATCTCAACACTGGAAAAAGAAAAGGAAGGAAACAATATGAGCGACCGTTTAATGGAGTTTCACGACGCTTTTTCTGAATTTGGAGACAAAAAGGACTACGTCAATTTCCTTCAGTTACAACTGGAAGATTCCAAAAAGACCGTGTCAGATTTAAATAAAGAATTGCAAACGAAAACTTTGCTGCAGCTAGCAGAGACCGATAGGCTTCGCCATACGGAACACCAACTCCACGCTTCTGAGTCTAAAGTGGAACGACTTAACAGTGAAAACATCAAGCTGAGACTTAAAGTTGACGACCTAAGAATGAAACTGCAAACCCACGCACAGAAGACGAATCCACAAAATTCAACTCAGACCGAACAACAAGCTAATGCGTCTATGAGGAAGACAAAATCGGCCGCTGAGCTGAACAACAGCAGGAAAGCAATCAGTCTAAAACAACCAGTATTGAAGGAGAAAGAAGAGGAAATTATTGCTCCGAAAGTTAAAGCTATGAAGAAGGAACCAGCGACTATAAAGCCAAAAACAAAACAAGTCACTTCATCGCAACCCACAGAGGAACTGAAAAGCGAAGAACAAGGGCAATCATCTGAACATTTGACTAACGGCAAAGGAAGAAGCAACCTTGTTACTCCACGAGTGAAATCAGAGGCTGGCGATTATGTTAATTTAAGCATACCGCGCATTTCACCGTTGTTGAATATGAACGGCTTTGAAAAGGAAATCAAGATTGCAGAGCCTCAAAGCGAAAGAAAGACCAGAGTCCGCTTCAGTACGAGCGCAGCAAGCGATGGTGATTTGTCGGAGAGTCGTGGCACAATGGAAACGGAGGCATTCGCGAAGCCGAAAGATCAACAGAAAGAGAACTTCATTCCCGAGGATAGCTACTCTGAAACAGGGAATGTATCCACAGTGCATGTAAAGGGACAAAAGAGTGCTCCAGTGGTTATAAATGTGAAAAAAGGCGAAATTAAAAACCAATGTCCACAGCAATAG

Transcript

rna-XM_068862193.1

ttgaaaatcggCGACCACTTCTGATAGCAAACCATGGCGGAATTGGAAAATGAGCAGTATTTTCTTAAAGAAGGATTACTTCGATTAAAGGAAGAAAACGAGGCACTGCAAAAGGATTTAGAATTAGCTGGAGAATTGGGCAAAAGTCTCCTTGAAAATAACCACGAATTGGAGAGAAAACTCGATGAAGTCAACTCGGAGTACGTTTGTTCACTGGAAAAAATCGAGGAACTTAAACAAGACAATCACACCTTGCGAACTCGGTTAGATACTGAAGTTCGCACGAACTCAAACCACACACACGAATTGGAggatttgaaagaaaaacttcggAAGGAATttgaaggaaaggaaaaatcaCAACAACTTACGACGGAAAAAAAGATCAACGATCTGAGAAAGGAGATCGAATCTTTGCAGAATGATGCTAGCAAACACGCAATGGTTGAAAATCAACTGCAAGAGAAgataaaaaaacaagaggaaatgCTAAGAAAAGCGCATCAAAGCAACGAGGAGCTGCAAAAGAAGGGAATGTCGAGACTGGAGAACGTTGAGGAATACATCAATCTTGCCTCGGAACTGAAGGAAGAAAGAGACGTTTTGATGATGAAGATAGCAGACTACGAAGATAATCAAGAGAGGATTGCTTTCGACCGAAACACGCTGAAGGAAAGATTTGAGCATTTGGAAGAGGAATTACAAGAGAAGACACGGCAAGCTCATACATGGTTTAACTGTTTGCAGGAAGCTCGCCTGGAGGCTGGTGAATTCAAAGCTGAGCTGGAGAACCTCAAGGCTGAAAATGCAAGGCGAAACTTTGGAAAACAAGGAAATTCTTTGTTTGGAGAGGTTGAAGACAGGCGATTGGAACTTGAAAAGAAATATGGGAGTTTACAAGCAAGGCACGAAAACATGGTCAAAATACACAACATGACAAAACAGCATTTGCAGAGGCTGAAGAATCAGGTGGCAACCCTTCTTCAAGTGAAGAGCTGTCACGCGGATGCGTCTCAGATTCAAAGACTGACCCACGCTTTGGTGCAAAAAGAAGGAGAGATTAAAATATTGAACGCGAAAATCTCAAcactggaaaaagaaaagGAAGGAAACAATATGAGCGACCGTTTAATGGAGTTTCACGACGCTTTTTCTGAATTTGGAGACAAAAAGGACTACGTCAATTTCCTTCAGTTACAACTGGAAGATTCCAAaaaGACCGTGTCAGATTTAAATAAAGAATTGCAAACGAAAACTTTGCTGCAGCTAGCAGAGACCGATAGGCTTCGCCATACGGAACACCAACTCCACGCTTCTGAGTCTAAAGTGGAACGACTTAACAGTGAAAACATCAAGCTGAGACTTAAAGTTGACGACCTAAGAATGAAACTGCAAACCCACGCACAGAAGACGAATCCACAAAATTCAACTCAGACCGAACAACAAGCTAATGCGTCTATGAGGAAGACAAAATCGGCCGCTGAGCTGAACAACAGCAGGAAAGCAATCAGTCTAAAACAACCAGTATTGAAGGAGAAAGAAGAGGAAATTATTGCTCCGAAAGTTAAAGCTATGAAGAAGGAACCAGCGACTataaagccaaaaacaaaacaagtcacTTCATCGCAACCCACAGAGGAACTGAAAAGCGAAGAACAAGGGCAATCATCTGAACATTTGACTAACGGCAAAGGAAGAAGCAACCTTGTTACTCCACGAGTGAAATCAGAGGCTGGCGATTATGTTAATTTAAGCATACCGCGCATTTCACCGTTGTTGAATATGAACGGCTTTGAAAAGGAAATCAAGATTGCAGAGCCTCAAAGCGAAAGAAAGACCAGAGTCCGCTTCAGTACGAGCGCAGCAAGCGATGGTGATTTGTCGGAGAGTCGTGGCACAATGGAAACGGAGGCATTCGCGAAGCCGAAAGATCAACAGAAAGAGAACTTCATTCCCGAGGATAGCTACTCTGAAACAGGGAATGTATCCACAGTGCATGTAAAGGGACAAAAGAGTGCTCCAGTGGTTATAAATGTGAAAAAAGGCGAAATTAAAAACCAATGTCCACAGCAATAGAGGAGAGGAAATCTTAATCAAAACCTGTTGGTGTCGCCGGGATGCTGCGAGAACGAGAGCTAGGCGAACATGCGTCGGACTATACGTTTGTATTTTAATATCTTTTTGGGTTATAGCTGTTGTTTTTATTCATCTGAAGTTgtgttatttttttcactttcgaAGACACATCAAAAATTGCAGTTTACACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q923A2	Protein Spindly OS=Mus musculus OX=10090 GN=Spdl1 PE=1 SV=2
Q08DR9	Protein Spindly OS=Bos taurus OX=9913 GN=SPDL1 PE=2 SV=1
Q96EA4	Protein Spindly OS=Homo sapiens OX=9606 GN=SPDL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007338 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_068718294.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR051149 all species →	Family	Spindly/BICDR Dynein Motor Adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32123 all species →	BICD FAMILY-LIKE CARGO ADAPTER	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_068718294.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26098	SPDL1; protein Spindly	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068718294.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

26TPM > 0

1Conditions

6.2Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	26	1.58	6.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	6.21
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	6.17
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.94
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	4.71
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.65
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	3.27
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	3.24
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	3.24
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.34
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.99
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.92
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.64
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.42
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.42
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.41
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.37
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.36
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.09
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.83
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.82
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.58
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.45
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.37
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.29
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.22
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.