Gene detail

Detailed information of XP_068719043.1 in Montipora capricornis

Genomic Location: chr9:48481334...48498409
NR annotation: XP_029182724.1, non-histone protein 10-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068862942.1

AGTTGGAAATTCTTgacaaagatggcggacgatGGTGATCAAGATATTGGAACATATATAGTGTCGGATCAAGAAACTCGTTGGAAAGGAAAATATTTTACTCTGCTTAAGTACTGCAGAGAAATCGAACAGGAAAACGAAAGATTAGTCAATCGCATTTACCATGTTAAGACACTCTTAAAACGCTATCGAAAACAGAGAAGtttccttAAAGACAGATTAGATGATTACAATGATGATTATCGAGATGTGCAGCCACCTTTTCAGGCTGAGCTTCTCTCAGAAATAGTCTCTGAAGCATTCCCTAAGCCAATCCACCCAGCACTGTTTACTGGTGAGTTTATGACTCCAGACTTTCCAGCTACGAAGAAAAGTAGGAAACGTGAGAGTTCAAAGGACAGGGACAAGGACAGAGACCCCAATGCTCCTAAGAAACCAGCTAATGCCTTTCTCATGTATTGTCAACAACAGCGTACAGTCATGCAGGATGATCAGAAAGATCCTAATATTGGTCATCATGAATTAACAAAATCCTTAGCAAAGGAATGGAAGAGTTTAGCAACAGATGATAAGAAGGTCTACTATGAAATGTATGAAAAGGACAAAGAGAGATacgaaaaggaaatgaaaaagtATTCATCAGATAAGATTCCAAAAGCACCTCCGGCCAAGAAACCAAGGACAAAAACCCCTAAACAGAAAACTGCAACATCATCATCTACAAAGACAGTGTCAACCGACAGTAAAAGCTTACCTGATGAAAGGAGCGCAGTTGTTGTTTCACCTACTTTAAATCCTCTCTTCTCACAAAGTCTGGGGTCCATGCCAGTGAATATTCCAAATATTCCAATGCCTCAGCTTATTCCTCTGACTGGAGAGGAGAGTGGATTTGACAACTATCAAGAACTAAATTCATCTCCTCAAGAATCCTTCCTTTAATATTTGAGAGTGATGAACTGATGGTCACTCTTCACAAGTTACTTACACTGTAATTGGAAAAGGTCGAACTGGTGGTGGAATCAAGGCTGCAATTTCAAAATATGCTGAAATGACAAATTGTAGCAAAGAGTTCTTGTAGGAAGCAATGGGTGTAACCAAAATATGCTTACACAATAGGAAGTTTGCAAACTTGTTTCAGCCTTCATTGTAAGAGAGGTTTAAATGGCTTTCCAATGTATCTAACCTAGAAGAGCTGTACCAATTTTCAACTCCGTCATTGCCTTACTGTATGTTaaaacaaagacagaaaatgGCCTCTACCCTTAAAATCCATAATCCTACTCTCATTGTTGTGCTCTAAACAATAGAAAGCCTTCAATCCTGTGGTCTCAACTTGCTACGGAGACCTTTCTCTTTTGGAGCTTACTTAATGATTAGTCCACTCGGCCTCGTCGTCTCACTTACTTGCCTTTGCGCAAGGAGTTTTAGAACAGATAACAGTTATGTCCTCAATACAAGGAAAGCGTGACAGAAAACTTTCTGATTGAATATTATTAACATGAGACTTACAGAAATCATAATGTTCTTTCAGTTTCAAAGATTTAGGCATGGTGAAGAGTGACCGAGTGAAAAACTGCAGCAAAATTCAGTTTGAGGCAGGCCGGGTCCGTGCTTGTTCTGGGTTCAGTGAGGCCATAATCCACAGATTCCGTGGACATTAAAACCAGGTGTGGCCCTAAACTCTCTTTAATAACTCAGCCCTGGCGATATTGTTGTCGCAGCCTAtgggccaatcaaaaagcttaGAAGAAGCACGAGCAGATACGAGCTAGGACTTCTAATCCCATACCAGCATGAACAAGTATGACTAGTATGGTGTTGTAAGCGGTTGTGAGTCACTTGTCTACGGCTTCCGTGAGGGCCTATTGGATTGCCATGATTTCATGCGCTGTTAGTAGGCTCTTCTTGACTCCATGATTGTGAATTTATAATTATAGAGAAAGTGGCTTAGAGGGCGGTCACATTATATCAGGGTATTTAGGGGAAATCTTAAGTTGATCACGCGTTTAaagctcgaaaatggtaatgtggaattcctatACTGATGAAATTATCGTTgtatcacaaacaagatgattatGAGTAAAAACTACCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03435	Non-histone protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR050342 all species →	Family	High Mobility Group Box (HMGB)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48112 all species →	HIGH MOBILITY GROUP PROTEIN DSP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008301 all species →	Molecular Function	DNA binding, bending	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068719043.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.