Gene detail

Detailed information of XP_068720258.1 in Montipora capricornis

Genomic Location: chr9:43127358...43153940
NR annotation: XP_015769724.1, PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X2 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138016967

ATGAAATTCCAACCAGAAAGGCTTCATTATAGCGCTACTCTGGCTGAGCTAGCTCATCGCGAATACCAAGCGGGGAGCTATGATCGAGCCGAGCAAATCTGTATGCAGTTATGGCGACAACAGCCTGAAAACACTGGGGTTTTGCTTCTTTTATCCTCAATACATTTTCAATGTCGTCGATTGGACAGATCGGCACATTTTAGCACACTAGCCATAAAGCAAAACCCAGTTCTTGCCGAGGCGTACTCGAACTTAGGCAACGTCTTCAAAGAAAGAGGACAACTTAAAGATGCGTTGGACAATTATCGCCACGCCGTGAAGTTAAAGCCCGATTTTATCGATGGCTACATCAATTTGGCGGCCGCCTTGGTAGCAGCTGGGGATTTAGAAGGAGCCGTGAATGCTTACGCGACCGCTTTGCAATATAATCCGGATCTCTACTGTGTAAGAAGTGATCTTGGCAACTTGTTAAAAGCTCTTGGTAGACTTGAAGAAGCTAAGGCGTGCTACTTGAAAGCCATAGAAACACAGCCCAGTTTTGCTGTGGCGTGGAGTAACCTCGGCTGTGTCTTCAATGCTCAAGGAGAGATCTGGCTGGCCATACATCACTTTGAGAAGGCTGTTCAGCTGGACCAGAACTTTCTTGATGCCTATATTAATCTTGGAAATGTTTTGAAAGAGGCACGGATTTTTGACAGAGCTGTGGCTGCTTATTTGCGTGCATTGAATTTGAGCCCCAACCATGCAGTTGTCCATGGTAACTTGGCTTGTGTTTACTACGAACAAGGACTTATTGATTTGGCTGTGGACACATACAGAAGGGCGATTGAACTGCAACCAAATTTCCCAGATGCTTACTGTAACTTGGCAAATGCCTTGAAGGAACAAGGAAAGGTTGCTGAAGCAGAAGAGTGCTACAACACAGCCTTGCGATTATGCTCCACCCATGCAGACTCCCTAAACAACCTTGCAAATATCAAAAGAGAGCAGGGCAAGATCGAAGAGTCTGTTAGACTGTACTGTAAAGCTTTAGAGATTTTTCCTGAGTTTGCTGCTGCACATTCAAACCTTGCAAGTGTTCTCCAACAGCAAGGGAAGCTTCATGACGCTCTTCTTCATTACAAGGAAGCTATCAGAATCCACCCCACCTTTGCTGATGCCTATTCAAACATGGGAAACACGCTGAAAGAAATGCAAGACATTCAGGGAGCTATTCAATGTTACACAAGAGCCATACAAATAAACCCTGCATTTGCTGATGCTCACAGTAACCTGGCTTCAGTCCACAAGGACTCTGGAAACATCCCTGAAGCAATCCAATCTTACCGAACAGCCTTGAAGCTTAAGCCTAGCTTCCCTGATGCTTATTGCAATCTGGCCCACTGTCTTCAGATAATCTGTGACTGGACAGATTATGAATCCCGCATGAAGAAGTTAGTTTCTATCGTGGCTGATCAGTTGGAGAATAACAGACTGCCTTCCGTGCATCCGCACCACAGCATGCTGTACCCACTGACGCACAAAATGAGACGAGATATTGCCAACAGACATGGCAATCTTTGCGTTGAAAAGGTTGCCCTTTTACACAAGCCTCCATACTCTTATCCCGAGTCATTGAAGGAGAGTGGTGGAAGGCTGAGAATAGGTTACGTGTCAAGCGACTTTGGGAACCACCCCACCTCGCATCTGATGCAAAGTATTCCAGGATTTCACGACACCAACAGAGTGGAGATATTCTGCTATGCGCTCACGGCTGATGACAATACGAGTTTCCGGAAAAAGATCGAGGCAGATGCCGAACACTTCGTGGATCTGTCGTCTGTGCCTTGCCATGGAGACGCCGCTGATCGTATCCATGCAGATGGCATTCATATTCTTGTTAATATGAATGGATACACGAAAGGAGCAAGGAACGAAATATTTGCCTTACGTCCAGCACCTATTCAGGTGATGTGGCTGGGCTACCCAGGAACAAGTGGTGCTCCGTACATGGACTACATCATTACAGATAAAGTCACCTCCCCCATGGAACTGGCCGATCAGTACTCGGAGAAGCTTGCCTACATGCCGCACACATTCTTCGTGGGAGACCACAAACAAATGTTTCCACACCTGATTCAGTACCTCAGAGCGTCCAGTAACCAAGTCATTGCTGAAGTCACGCAGAATGGAATGGTACCTGCGCACGCTGCTGCTGTCTTTCTCGATGAGCAGAAGAATGATCCGAAGTTGGTTAACAAAGTGGGCGCACTGATCGAAGAGAAGAAGAGAGAGTATTCCGGCTGCAAAGACAGCGGCGAGAGCATACCAAGCAGTGTGCCTATCATCGCACGCTCGCAGTACGGCCTTCCGGAGGATGCAGTCGTTTATTGCAATTTCAATCAGTTGTACAAGATTGACCCACCGACATTACGCAGCTGGGTGAACATCCTCAAACGTGTGCCCAATTCTGTTTTGTGGTTGCTGAGGTTCCCTGCTGTGGGCGAGCCGAATCTCAAGGCACAGGCCATGGCTATGGGTCTGTCACAGGAGCGCGTTGTCTTCTCTCCAGTGGCGCCCAAAGAAGAACACGTTCGCCGCGGTCAGCTGGCAGACGTCTGTCTTGACACGCCGCTTTGTAATGGTCACACTACGGGCATGGATGTCTTGTGGGCCGGTTGCCCGATGGTCACGCTGCCGCTAGAAACGTTAGCGTCTCGAGTTGCCTCCTCACAGCTCACTGCTCTCGGATGCCCGGAGCTAGTGGCCAGAAATCGAGAAGATTACGAGAACATCGCCATCGGACTTGGAAATGATCTGAATTATTTAAAGAAGGTGAAAGATAAAGTTTGGAATGCCCGCCTTCGAAGCCCACTGTTCAACACAAGGCAGTACGCACATGACCTGGAAAATCTGTTACTAAAAATTTGGAGAAGACACGAAAGTGACCTAGAGTGCGACCATGTCAGTTGTTGA

Transcript

rna-XM_068864157.1

ATTGATCAATGAAATTCTCGAGTTTGTTCACGTCCGAGACGTACCGATCGTTAAATTCCTTTGTCTAGCCACTCTGTAGACAGTTGTGCCTCCAAATTCAGTATAAATTACGCGTTTTCGGACATTTATAGgcgaaaaataatgaaattccAACCAGAAAGGCTTCATTATAGCGCTACTCTGGCTGAGCTAGCTCATCGCGAATACCAAGCGGGGAGCTATGATCGAGCCGAGCAAATCTGTATGCAGTTATGGCGACAACAGCCTGAAAACACTGGGGTTTTGCTTCTTTTATCCTCAATACATTTTCAATGTCGTCGATTGGACAGATCGGCACATTTTAGCACACTAGCCATAAAGCAAAACCCAGTTCTTGCCGAGGCGTACTCGAACTTAGGCAACGTCTTCAAAGAAAGAGGACAACTTAAAGATGCGTTGGACAATTATCGCCACGCCGTGAAGTTAAAGCCCGATTTTATCGATGGCTACATCAATTTGGCGGCCGCCTTGGTAGCAGCTGGGGATTTAGAAGGAGCCGTGAATGCTTACGCGACCGCTTTGCAATATAATCCGGATCTCTACTGTGTAAGAAGTGATCTTGGCAACTTGTTAAAAGCTCTTGGTAGACTTGAAGAAGCTAAGGCGTGCTACTTGAAAGCCATAGAAACACAGCCCAGTTTTGCTGTGGCGTGGAGTAACCTCGGCTGTGTCTTCAATGCTCAAGGAGAGATCTGGCTGGCCATACATCACTTTGAGAAGGCTGTTCAGCTGGACCAGAACTTTCTTGATGCCTATATTAATCTtggaaatgttttgaaagaggCACGGATTTTTGACAGAGCTGTGGCTGCTTATTTGCGTGCATTGAATTTGAGCCCCAACCATGCAGTTGTCCATGGTAACTTGGCTTGTGTTTACTACGAACAAGGACTTATTGATTTGGCTGTGGACACATACAGAAGGGCGATTGAACTGCAACCAAATTTCCCAGATGCTTACTGTAACTTGGCAAATGCCTTGAAGGAACAAGGAAAGGTTGCTGAAGCAGAAGAGTGCTACAACACAGCCTTGCGATTATGCTCCACCCATGCAGACTCCCTAAACAACcttgcaaatatcaaaagagaGCAGGGCAAGATCGAAGAGTCTGTTAGACTGTACTGTAAAGCTTTAGagATTTTTCCTGAGTTTGCTGCTGCACATTCAAACCTTGCAAGTGTTCTCCAACAGCAAGGGAAGCTTCATGACGCTCTTCTTCATTACAAGGAAGCTATCAGAATCCACCCCACCTTTGCTGATGCCTATTCAAACATGGGAAACACGCTGAAAGAAATGCAAGACATTCAGGGAGCTATTCAATGTTACACAAGAGCCATACAAATAAACCCTGCATTTGCTGATGCTCACAGTAACCTGGCTTCAGTCCACAAGGACTCTGGAAACATCCCTGAAGCAATCCAATCTTACCGAACAGCCTTGAAGCTTAAGCCTAGCTTCCCTGATGCTTATTGCAATCTGGCCCACTGTCTTCAGATAATCTGTGACTGGACAGATTATGAATCCCGCATGAAGAAGTTAGTTTCTATCGTGGCTGATCAGTTGGAGAATAACAGACTGCCTTCCGTGCATCCGCACCACAGCATGCTGTACCCACTGACGCACAAAATGAGACGAGATATTGCCAACAGACATGGCAATCTTTGCGTTGAAAAGGTTGCCCTTTTACACAAGCCTCCATACTCTTATCCCGAGTCATTGAAGGAGAGTGGTGGAAGGCTGAGAATAGGTTACGTGTCAAGCGACTTTGGGAACCACCCCACCTCGCATCTGATGCAAAGTATTCCAGGATTTCACGACACCAACAGAGTGGAGATATTCTGCTATGCGCTCACGGCTGATGACAATACGAGTTTCCGGAAAAAGATCGAGGCAGATGCCGAACACTTCGTGGATCTGTCGTCTGTGCCTTGCCATGGAGACGCCGCTGATCGTATCCATGCAGATGGCATTCATATTCTTGTTAATATGAATGGATACACGAAAGGAGCAAGGAACGAAATATTTGCCTTACGTCCAGCACCTATTCAGGTGATGTGGCTGGGCTACCCAGGAACAAGTGGTGCTCCGTACATGGACTACATCATTACAGATAAAGTCACCTCCCCCATGGAACTGGCCGATCAGTACTCGGAGAAGCTTGCCTACATGCCGCACACATTCTTCGTGGGAGACCACAAACAAATGTTTCCACACCTGATTCAGTACCTCAGAGCGTCCAGTAACCAAGTCATTGCTGAAGTCACGCAGAATGGAATGGTACCTGCGCACGCTGCTGCTGTCTTTCTCGATGAGCAGAAGAATGATCCGAAGTTGGTTAACAAAGTGGGCGCACTGATcgaagagaagaagagagagtaTTCCGGCTGCAAAGACAGCGGCGAGAGCATACCAAGCAGTGTGCCTATCATCGCACGCTCGCAGTACGGCCTTCCGGAGGATGCAGTCGTTTATTGCAATTTCAATCAGTTGTACAAGATTGACCCACCGACATTACGCAGCTGGGTGAACATCCTCAAACGTGTGCCCAATTCTGTTTTGTGGTTGCTGAGGTTCCCTGCTGTGGGCGAGCCGAATCTCAAGGCACAGGCCATGGCTATGGGTCTGTCACAGGAGCGCGTTGTCTTCTCTCCAGTGGCGCCCAAAGAAGAACACGTTCGCCGCGGTCAGCTGGCAGACGTCTGTCTTGACACGCCGCTTTGTAATGGTCACACTACGGGCATGGATGTCTTGTGGGCCGGTTGCCCGATGGTCACGCTGCCGCTAGAAACGTTAGCGTCTCGAGTTGCCTCCTCACAGCTCACTGCTCTCGGATGCCCGGAGCTAGTGGCCAGAAATCGAGAAGATTACGAGAACATCGCCATCGGACTTGGAAATGATCTGAATTATTTAAAGAAGGTGAAAGATAAAGTTTGGAATGCCCGCCTTCGAAGCCCACTGTTCAACACAAGGCAGTACGCACATGACCTGGAAAATCTGTTACTAAAAATTTGGAGAAGACACGAAAGTGACCTAGAGTGCGACCATGTCAGTTGTTGAGTTTGACGGAGAACGTGCATTCGGCTAAGAAACTGAGGACAAGAGAGCCCGCCCGGTTCCATTCAACCTTGCTCAAACGACCTCTCTACCGTTTTAAGGCAGTTTTCGGTAACGAAACGAAGAACGTTTGAAATGAAAACCGAGACTTTTTTCTGATCACCGCAGTCACACAGAAACGAGCGAGCGTGTTTTTAATGAGTAACTCCCAGTTCATTTTATGATTTGACGAAATAGGTCTTTGCTTTTTAGTTTTTTGGCCAACACGAACACGTTTATTTCTAAGTTAATTAAAGAGGTAACATgttgtacatatatatatatatatatacatataaaacAAATTCCTAATTACTAAATATAAGTGATAATTTGTGGCTTGTGTGACGTGATGCCATCGACACGGCTTTTGAGTTTTCATTGCTCTGAAAAGGCACTAGGAATCGGACGTTCTTTATGCGATGAATAGCAAACACATAATGCTGCATGCTTACTCTCGGCAAAAGGGTTATGAAAagatgaaaagagaaaaaagtgtATTAAATGGTTTGAGTTAACATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15294	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens OX=9606 GN=OGT PE=1 SV=3
P81436	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus OX=9986 GN=OGT PE=1 SV=2
Q27HV0	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa OX=9823 GN=OGT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13844 all species →	Glyco_transf_41	Glycosyl transferase family 41	Family	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR029489 all species →	Domain	O-GlcNAc transferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44366 all species →	UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09667	OGT; protein O-GlcNAc transferase	EC:2.4.1.255	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720258.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

949.5Max TPM

172.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	172.85	949.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	949.50
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	393.41
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	393.02
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	263.44
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	238.88
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	233.44
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	221.97
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	208.22
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	190.25
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	189.42
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	187.99
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	186.65
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	183.09
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	181.04
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	164.77
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	158.02
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	157.17
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	155.54
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	154.71
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	151.08
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	147.77
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	147.19
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	144.86
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	144.56
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	117.15
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	115.45
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	113.32
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	112.95
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	75.89
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	74.20
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	67.58
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.