Gene detail

Detailed information of XP_068720320.1 in Montipora capricornis

Genomic Location: chr9:26833365...26842274
NR annotation: XP_027036503.1, malignant T-cell-amplified sequence 1-like [Pocillopora damicornis]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KIE4	Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1
Q9ULC4	Malignant T-cell-amplified sequence 1 OS=Homo sapiens OX=9606 GN=MCTS1 PE=1 SV=1
Q9DB27	Malignant T-cell-amplified sequence 1 OS=Mus musculus OX=10090 GN=Mcts1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01472 all species →	PUA	PUA domain	Family	Interproscan
PF17832 all species →	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002478 all species →	Domain	PUA domain	Interproscan
IPR016437 all species →	Family	MCT-1/Tma20	Interproscan
IPR004521 all species →	Domain	Uncharacterised domain CHP00451	Interproscan
IPR041366 all species →	Domain	Pre-PUA domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22798 all species →	MCT-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07575	MCTS, TMA20; malignant T-cell-amplified sequence	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720320.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

123.7Max TPM

65.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	65.19	123.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	123.72
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	115.94
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	111.04
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	107.87
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	105.94
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	99.42
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	99.18
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	98.83
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	95.48
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	93.85
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	87.90
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	87.73
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	83.89
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	82.79
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	80.75
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	80.24
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	78.11
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	73.76
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	72.79
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	72.70
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	72.00
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	69.43
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	66.78
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	64.34
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	63.73
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	58.56
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	57.30
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	42.60
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.