Gene detail

Detailed information of XP_068720331.1 in Montipora capricornis

Genomic Location: chr9:11916743...11918063
NR annotation: XP_020611604.1, 40S ribosomal protein S23 [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YQ1	Small ribosomal subunit protein uS12 OS=Ictalurus punctatus OX=7998 GN=rps23 PE=2 SV=1
Q9GRJ3	Small ribosomal subunit protein uS12 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1
Q3T199	Small ribosomal subunit protein uS12 OS=Bos taurus OX=9913 GN=RPS23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009017 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00164 all species →	Ribosom_S12_S23	Ribosomal protein S12/S23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006032 all species →	Family	Small ribosomal subunit protein uS12	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR005680 all species →	Family	Small ribosomal subunit protein uS12, eukaryotic/archaeal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11652 all species →	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02973	RP-S23e, RPS23; small subunit ribosomal protein S23e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720331.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

3,366.1Max TPM

1,982.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	1,982.64	3,366.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	3,366.14
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	3,320.60
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	3,281.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	3,049.69
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	3,039.16
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	3,023.06
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	2,993.75
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2,623.54
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2,561.62
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	2,509.33
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2,506.53
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	2,459.25
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	2,427.54
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	2,386.71
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	2,381.61
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	2,376.93
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	2,343.66
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	2,326.20
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	2,290.14
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	2,274.87
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	2,250.75
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2,205.82
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2,058.00
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2,019.62
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	1,730.68
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	1,651.86
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	1,644.78
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	1,629.44
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	1,325.62
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	1,317.20
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.