Gene detail

Detailed information of XP_068720346.1 in Montipora capricornis

Genomic Location: chr9:12636161...12777944
NR annotation: XP_044177005.1, ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138017033

ATGCGTGGTGCAAAACAAAGGAATCACCTTAAGCAAGTTCTTGTAATTGAAGAAAAAAGTGAAGATGGTACTTGGCCACGTCAGCAACGGCAAAGCTCATATTCATCTTCAACAGTCACATCAAGCACTGAACGATGTAGTCAAGTCAGTTCAAATCCATATGGCAGTAGTTACAGCTCCAGGAGTTGGGGATATGACAGATCAATTAGTTCTCTGCCAGGACTTACGGGACTTGCAAATCTTGGAAATACTTGTTTTATGAACTCAGCTTTGCAATGCCTTAGTAACTGTGTCCCACTAACAGACTTCTTTATCTCTGGAAACTACAAAGATGAGCTAAATTGTGATAACCCATTGGGGATGAAAGGAGAGATTGCAAATGCATATGCAGGTCTCCTCAATCAGATCTGGGGTGAACATTACAGCTCAGTAGCTCCAAGACAGTTCAAGATGCAGGTTGGACGGTTTGCCCCACAGTTTTCCGGTTATCAGCAACAAGATTCTCAGGAGCTTCTTGCTTTTCTTTTGGATGGACTTCACGAGGATTTGAACCGCGTTAAGAGGAAACCGTATATTGAACTAAAGGATGCTGATGGAAGGCCTGATGAGACTGTTGCCAATGAATCCTGGGAAAATCACCTGCAAAGAAACAACTCTGTTATTGTGGAGACATTTCATGGTCTTTTTAAATCCACTCTGGTTTGTCCAGACTGCAAGAAGGTTTCTGTGACATTTGATCCATTCTGCTACCTTTCCCTGCCACTGCCAGTCAAAAAGGAGAGAAGCCTTGATGTGTTTCTTGTTCGAAAAGACCCTTTTCAGAAACCAATCCTGTATAAATTAACTGTGCCTAAGATGGGGAATATTGCTGACTTACTTGATGTGTTGTCAAAAGAGAGCAGAATTCCTAAAGAAAAGATGGTGGTCGCAGATGTCTACAATCATAGGTTTCACAAAGTGTTTACTTTGAGTGAGTCACTGACTCAAATTCTTGACAGAGATGACATATTTGTGTATGAAGTGTTGCATAGCAAGTCAGATGATGAAGATGGTAATTCAGTGGTAATTCCAGTGTACCAGAGAGAGAAAAGGGTTCGTCTGACTTCCTACAACAGTTATTATTCAAGTTCTAATAAAGCATTGTTTGGCCTACCACTGATGATTTCTATTCCAAAGAAAAACTTGACTTACAGGGCATTGTACAACATTTTGTTGGAGAGAATGAAACGCTTTGTTAGGTTGCCAGATGAGGAGAAGGAAGTTGAAATGGGTTATGGAAAAGAAGAACCAGATGTTGACATGAATGAGGAAGTGAAAGGTGGCAGTGAAACTGAAGATTCTGAGGAATCAGAATTGGAGAAAGCCTGTCAAAATGTTCATGTCAATAGTGATGAAAATGAAGATGACCAAGTGAATCCACTTAATAATGAACTAGATTTGTCTCAGCATGGAAAGAAAACGAAGTATTTGTTTGACTTGACGCTAGTTAATTCGTATGGCAGTAATGATGTCCAAGCATTGAAAGACAGTGAAGAACCTCTAGAATTGACAGGACGTTGTTTTCTTGCACTCGACTGGGATTCAAAGGTTAAGGAAAAGTACTACGATGATCAATTGGCTGAGGAGTCTGAAGAGCATGAAAGCGTGCACAAAAAACCAGCTCAGAGGAAGAATTGCGTTGGATTAAGTGACTGCATCGATCTCTTTTTATCAAAGGAGAAACTTGGAGCAAATGACCCATGGTATTGTCCATCTTGCAAGAAACACCAACAAGCGACAAAAAAGTTTGACCTTTGGTCTCTTCCCAAAATCCTTGTTGTTCACCTCAAACGATTTTCATACAACAGTTTTTGGCGGGATAAATTGGATACGTTTGTCAGTGTTCCTTTGTGGAACCTTGACATGTCAGGCTATGTTATAAACGGAGATCAGCCGCGACCAATTTACAATTTGATTGCTGTTTCGAACCATTATGGGGGCATGGGAGGAGGACATTACACAGCTTACGCCAAGAATTGCAAAGATGGGAGATGGTATTCATTTGACGACAGCTCCGTTTCTGCTGCAGATGAGGGGCAAATTGTTTCCAAGGCAGCTTATGTTCTTTTTTACGAGCGACAAGAGATCAAAAACGAGGAGACTATGGAAGAGAAAGATGCAGGGACCAATTGCACTGATCACGATGTGGATATGCTGGCTGTATGA

Transcript

rna-XM_068864245.1

AGAAGAGTTACGTATCAGATGGCCGGGGTGAAACTAGTTGCAATGTTATGCACAGTACGATATGCGTGGtgcaaaacaaaggaatcaccttaagcaaGTTCttgtaattgaagaaaaaagTGAAGATGGTACTTGGCCACGTCAGCAACGGCAAAGCTCATATTCATCTTCAACAGTCACATCAAGCACTGAACGATGTAGTCAAGTCAGTTCAAATCCATATGGCAGTAGTTACAGCTCCAGGAGTTGGGGATATGACAGATCAATTAGTTCTCTGCCAGGACTTACGGGACTTGCAAATCTTGGAAATACTTGTTTTATGAACTCAGCTTTGCAATGCCTTAGTAACTGTGTCCCACTAACAGACTTCTTTATCTCTGGAAACTACAAAGATGAGCTAAATTGTGATAACCCATTGGGGATGAAAGGAGAGATTGCAAATGCATATGCAGGTCTCCTCAATCAGATCTGGGGTGAACATTACAGCTCAGTAGCTCCAAGACAGTTCAAGATGCAGGTTGGACGGTTTGCCCCACAGTTTTCCGGTTATCAGCAACAAGATTCTCAGGAgcttcttgcttttcttttggatGGACTTCACGAGGATTTGAACCGCGTTAAGAGGAAACCGTATATTGAACTAAAGGATGCTGATGGAAGGCCTGATGAGACTGTTGCCAATGAATCCTGGGAAAATCACCTGCAAAGAAACAACTCTGTTATTGTGGAGACATTTCATGGTCTTTTTAAATCCACTCTGGTTTGTCCAGACTGCAAGAAGGTTTCTGTGACATTTGATCCATTCTGCTACCTTTCCCTGCCACTGCCAGTCAAAAAGGAGAGAAGCCTTGATGTGTTTCTTGTTCGAAAAGACCCTTTTCAGAAACCAATCCTGtATAAATTAACTGTGCCTAAGATGGGGAATATTGCTGACTTACTTGATGTGTTGTCAAAAGAGAGCAGAATTCCTAAAGAAAAGATGGTGGTCGCAGATGTCTACAATCATAGGTTTCACAAAGTGTTTACTTTGAGTGAGTCACTGACTCAAATTCTTGACAGAGATGACATATTTGTGTATGAAGTGTTGCATAGCAAGTCAGATGATGAAGATGGTAATTCAGTGGTAATTCCAGTGTACCAGAGAGAGAAAAGGGTTCGTCTGACTTCCTACAACAGTTATTATTCAAGTTCTAATAAAGCATTGTTTGGCCTACCACTGATGATTTCTATTCCAAAGAAAAACTTGACTTACAGGGCATTGTACAACATTTTGTTGGAGAGAATGAAacgCTTTGTTAGGTTGCCAGATGAGGAGAAGGAAGTTGAAATGGGTTATGGAAAAGAAGAACCAGatGTTGACATGAATGAGGAAGTGAAAGGTGGCAGTGAAACTGAAGATTCTGAGGAATCAGAATTGGAGAAAGCCTGTCAAAATGTTCATGTCAATAGTGATGAAAATGAAGATGACCAAGTGAATCCACTTAATAATGAACTAGATTTGTCTCAGCATGGAAAGAAAACGAAGTATTTGTTTGACTTGACGCTAGTTAATTCGTATGGCAGTAATGATGTCCAAGCATTGAAAGACAGTGAAGAACCTCTAGAATTGACAGGACGTTGTTTTCTTGCACTCGACTGGGATTCAAAGGTTAAGGAAAAGTACTACGATGATCAATTGGCTGAGGAGTCTGAAGAGCATGAAAGCGTGCACAAAAAACCAGCTCAGAGGAAGAATTGCGTTGGATTAAGTGACTGCATCGATCTCTTTTTATCAAAGGAGAAACTTGGAGCAAATGACCCATGGTATTGTCCATCTTGCAAGAAACACCAACAAGCGACAAAAAAGTTTGACCTTTGGTCTCTTCCCAAAATCCTTGTTGTTCACCTCAAACGATTTTCATACAACAGtttttggcGGGATAAATTGGATACGTTTGTCAGTGTTCCTTTGTGGAACCTTGACATGTCAGGCTATGTTATAAACGGAGATCAGCCGCGACCAATTTACAATTTGATTGCTGTTTCGaACCATTATGGGGGCATGGGAGGAGGACATTACACAGCTTACGCCAAGAATTGCAAAGATGGGAGATGGTATTCATTTGACGACAGCTCCGTTTCTGCTGCAGATGAGGGGCAAATTGTTTCCAAGGCAGCTTATGTTCTTTTTTACGAGCGACAAGAGATCAAAAACGAGGAGACTATGGAAGAGAAAGATGCAGGGACCAATTGCACTGATCACGATGTGGATATGCTGGCTGTATGATGACCGACGACGCTCATCACGCAAGAAGGTCTTTCACTTGATTGGGATGTAAGAGGCTTCGAGCACTTGCACAGTcgataattatattttacatttaaaagaaCTTTGAATGAATCTCTGCGCTTTGACTTAGAGAAGAAatgttgaaataattttaagaGCATTAGAAAACGGAAGTTAGTCAGTGAACTTGGTCGTATGATTATGAACCTAGGTACAGTAACTGACTTGGATTAATATTTGCGAAGTTAGAACAAAGAGAAACAATGTTAATGTCACGAATGATAAGAAAAGCCTGAGGTGTCCGTTTAAAGAATTTAAATTGCTTTGGACTTTAaagggaagaccttagacacCAATGACCAGAGCCAAGGTTGCTGACCaacggttttcgttaaaacaatggtttgctgggggtgctcagtcttgcgggctcagaaaacctggttgtggtcattgttatttaaggtttttcactTTAAAGAGTTCATACATTAAAGCATTTGTAACATGGCGATTTTGTTGCCTGTATCCTTTAAACAGATGTTGTTGTAATGAAAGACAGAAATTGAAATAAACTGTAGCGATTTTTCTGGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
Q5RCD3	Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii OX=9601 GN=USP4 PE=2 SV=1
Q9R085	Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus OX=10116 GN=Usp15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14533 all species →	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029346 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11835	USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.