Gene detail

Detailed information of XP_068720352.1 in Montipora capricornis

Genomic Location: chr9:35318113...35330454
NR annotation: CAH3195870.1, unnamed protein product [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068864251.1

cTTCGTAGCTAACGTTGCAGTTTTCACTTCGTGGAGCCACGAACCGGTCAATTTTGTAATAGCAATTTTAGTGAAAAACTCCAGCGATTCCAAGCTCTTCACTTTTACATATTTATTATTACTTGCCTGTGCACTGAGTTCCTAAAACTCAATCTTGAAGCGTGAAAGACAATGAATTGTGACAATCTCGTTTTGCTTGTGACTGCAGCTTTTAGCGTATTCGCGAACATCGATTTGGCACTTGCGAAGGACTATTACAAGATTTTGGGTGTTTCGAGGGATGCGAACGACAGACAGATCAAAAAGGCTTTTCGAAAGCTTGCCATGAAGTACCATCCTgataaaaataagcaaaaagaTGCAGAGGCTAAATTTCGCGAAATCGCGGAAGCATATGAAGTTCTATCAGATGAAAAGAAGAGACATCAATATGACCAGTTTGGATCTGAAGGAATGAATGATAATGGTTTTAACTTTCATCAGCAAGGTTTTCAAAGCTTTGATGACATTTTCAAAGATTTTGACTTTGGAGCTGGACACGGAAATAGAAAGGAGTGGAAGTTTTCTTTTGGAGATGGTGGATTTGATGATTTCTTCgatgatgatattgatgatgacgatgatgatgaccttTTTGGGGGTTTTAAATTTGGTGGCTTTGGAGACTCTTTCTTTGATCATGATCACGATTCGAATTTTCGCAAATCCAGACAAAGAGAGGATGTTTATGATAATGGTCATGGACACAGATTTCATAGAAATGTTCGACATGCAGAATTTCAACAATCCAGTCGAGGTAGAACTTGCCGGACTGTGACAAGGAAAGTAGGAAACATGGTTACGACATTCACAGATTGCTCCTAGATATTTTGTAGTTTAACAGCCCATAAAGGAATCAATATTTGGTCATATGGTATATATGGTCATATGGTATATATGGTCATATGGTATAATGGCGTAATGGATTATCTCTAGGGGTTTTTCGGAAAAGTGTTGGTACTAATAAACCCATTAACACCTCAAACACCCTGGGTACACTataggacacccccagttgacgagtaaaatcatctggcattagacagattAATATTATGATAAGTCTCACTCCGAGGGGTCAATGGATTCAACCTGACAACAAACAATATTGTACTGTTATACCTCAGTGGTAACTTTGTCCTAAGCACTGCGCTGTAGTCAGTGAGCAGACTGTTACTTTCTGTTTTATATAGCTACTGCTAAACTGACACTTCGTATCAGCTGATGGGCCTAATAGTCTCTATAAAGAAATTGTGGTGCTGATGTTTCAAGCTTTATCCCTTTCTCTGACAAAGAGCTAACACTTGAAATGTAGCTTTTCCTTGTCTCTTTAATGGTCAATTTAGTATCATCAACTCCTATGATATTAGCAAATTTTTCTGGTCAACTTTACAAAATAGAAGATAATTTTTATCTCTAGGTATCGCAGTAAATTTTGACATCCAGGCTAAATGGACAAGATTTTGGTCTTTGATGAAAATGTCAGATTACCATAAACACTCATGTAAGCTGTTAATGTCATTAATTAATGTGTAATGTTAGTGCCTTTTTGTGTCACTGGAAGTTTTGACTGCGTTCATGTCACTTGTCATTGTTTACTTAAAAGGCTCTGTTGTGTTGCCAATTGTTATTGTTGTGTCAAGTTTGGGCCCTACCCCTTGGAAGGCTTCCATTAAGGTACATGAATGCAAGTTAGTGTAACTTATCAACATATTGATTCTTTTCTATTCAGTTGTGAGCATGTCTGTGACATTACTGAACAACGAAACACAGAAAcaatgtttaatctcaaatccaacctttcatgtttagtattcaatgtatggtgggatcatacatggtgttttggagcttcgttttgctgtttcgtggtttagttaTGCCCGCATGTCTGTAGGTTTGGTATGAGAGGGGCCTGTTCAGAATGATTTTAGGGAATCACCTTGTGATACAGAAACAAGGTACTGCtataaataggccatttgcaacaaactggtcacatgactAATAATTGGTGAAGTTAAAGCTTGGACTTTATaaattccagaaatggaaagataaGGTTTGTCATAGccagaatacaaattttcagagaaataccACGAAAGATAAAGAttttaagtaatgtttaaaaaatgagccgcagtgttttatcggggtttaaaaacatgaggcgtagccgagtgtttttagacccgataaaacatgtgctgcaagttttttgactggcttcaaaaacattccacaaagagtgTGTCCGTCTGGagtcaaaacaatggttcaaattgtgagatgTGAATATttgcatacaagaaaaacaagctatgccttattagtattctttataaaaagaatactaacgaggagtgttttatcaggatataaagctcatacacgtaaCGTTTTATCGATggtttgataggctgttaggctcatgaactATTAATTAGTTTTGAAGAGCatttaaacacttgaaaatTCCATACTTTTGTTTATGAACGAAAAGCCTTTGCCCTCCAGTGTAGTTTTTCTTAATTATGCGCCACAAACAGAGCTTAGATTCCTATTGTTACCATGGGTCAATAAGTGAGAATAATGTGCAAGGGTGGAAATTTTGAGACTTTCATATTTTGAAGGAAGAATTTTAAAGTGGTttgaaaacttggaaaaatacaaggatttgtatgaaattCATTGAAGCGTGACTGGGTGGCAAAGCGTCCTTTTCATTCTTTCAACTGTAACAACGCCAGTTTAAACGATGTACTTACAAAAATCGGCATTGTAGCATATTTTGCACTGCTCTTTTTACTTgtggaaaaataatttcatgaaaCCAGCAAAATGATCGTGTTTATGAGAAAAGGTCACGTGACgaattgttgcaaaaggcctattcttgGGTAACCAGTAATTTCATTGTAGAAAtactaaatttatttttataagGAAGGAATTTTTTCGTGAGAAATCATTGTCTCTGCAGTTGACATTACTGTCTGAAGGTTAGTTGATGCATTATGTTAACTATAAATTTCAACTGGGTTGTACAGAATTATTTGTAAATGGAATAAAAACTTGGTTATTTCctaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97554	DnaJ homolog subfamily B member 9 OS=Rattus norvegicus OX=10116 GN=Dnajb9 PE=2 SV=2
Q9QYI6	DnaJ homolog subfamily B member 9 OS=Mus musculus OX=10090 GN=Dnajb9 PE=1 SV=2
Q5R9A4	DnaJ homolog subfamily B member 9 OS=Pongo abelii OX=9601 GN=DNAJB9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007512 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR051948 all species →	Family	Hsp70 co-chaperone J-domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44360 all species →	DNAJ HOMOLOG SUBFAMILY B MEMBER 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09515	DNAJB9; DnaJ homolog subfamily B member 9	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720352.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

118.5Max TPM

60.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	60.14	118.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	118.48
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	113.78
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	107.60
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	106.06
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	106.06
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	103.99
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	97.75
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	94.27
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	86.32
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	86.25
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	84.10
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	67.51
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	66.40
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	65.97
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	64.46
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	62.35
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	61.66
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	61.33
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	56.93
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	56.34
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	55.10
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	54.00
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	53.81
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	52.75
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	51.40
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	51.26
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	50.90
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	48.04
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	40.42
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.73
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.