Gene detail

Detailed information of XP_068720368.1 in Montipora capricornis

Genomic Location: chr9:48108462...48117065
NR annotation: XP_015770259.1, PREDICTED: glucosamine-6-phosphate isomerase 2-like isoform X2 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068864267.1

ATAACCGCTGTGCAGTAAGTCGTCTTCATACCTGTTCGCGCTGTCGTTCGCGCTGCTTCACGCTAActccattgttttctttctttttgtagaTAATCGGTACCAACAAAACAATCTTCCATCAAAAGCATGAGGTTGGTTATTTGTGACGACTATGATAAATTATCGGAGTGGTCTGCCAAATATGTGCGCAACAAGATTCTGAAGTTTCAACCTGGGCCTGACAAATTTTTTGTACTTGGTCTACCTACAGGTAGTTCACCTCTTGGAATGTATAAGAAGCTTGTTGAATTTTGTAATAGAGGGGAACTTTCTTTCAACTATGTCAAGACATTTAACATGGATGAGTATGTTGGACTACCACGTGATCACCCTGAGAGCTACCATTCTTTTATGTGGGATAATTTCTTTAAGCATATCGACATAGATCCCAAAAATGTGCACATTTTGGATGGTAATGCAGAAGACCTGGATGCTGAATGTGACAATTACGAGGAAAAGATCACTCAAGCTGGAGGAGTTGATCTGTTTATAGGAGGAATTGGAAGTGATGGTCACATTGCATTTAATGAACCTGGATCTTCTCTGGTGTCAAGGACTCGTGTCAAGACCTTGGCCAAGGAGACAATTGTGGCCAACGCCCGGTTCTTTGATAATGACATGTCTAAGGTGCCAACTATGGCTTTAACTGTTGGCGTTGCCACTGTTATGGATGCCAAAGAGGTTCTTATTTTAATCAGTGGTGTTAAGAAGGCTCATGCCCTTCGTCAGGCAACCGAGGAAGGTGTAAATCACATGTGTACTGTGTCAGCATTTCAGCAGCATCCTCAAACAATTTTTGTCGTGGATGAAGATGCGACAATGGAGTTGAGAGTTCGGACTGTTAAGTACTTCAAAGGCTTGATGGATGTTCACAACAAGCTCGTCGAAGACCCACAGGATCCTACTGCTCCACCAAGTGCAAAAAAGCTGAAAACTGATGATCGTCTGTAGAAGATTTGAAGAGTTTAATCTAAAAGATAAACAACAGtgaaaagaaaggaagtgtTTTCATAGATTGGAAAGAAATCGCCTTTCAAATCTTTCAATGATCATAATCTCTGAAATAACACAGGTTTCAACAACTAGAGGGAGTGGCTTATCAGAAAGATTAATTCTACAACTCTGTTTCATGTAATGGCAATATTATGGCACCAAATAAACcatcaataattgcttaacaagatgcttttatcaatgtgacgtaatacgttaccatggccacaaaagagccatctaaaagcAACCTATATTTTGCTGCTGAAAAGTGCTCAGCAGGCtgagatgaaactctctgcaaagttagagaaaaaaaatttcctggagcggattcagagccaccttaaaattttccagttgtggAGGTTGCTATGAATTTTCTTAACTTTGCATAGTTgttattatttgtttatttgttgagggttgttattgttgtttatttggtaccataacattgctgttacgtgaaaCAGTTCGGTAGATTGAATCCTTCCAAGTAGTACTAGCTTGCAAAGCAGGCTcttttgttgaaaatggcgcaCGGTCGACATATAAGGGCTTGGTTAGTTTCCTTTCAAAACTAGTAaccaagcccttatatttcgaccgcgcgccatttttaAAGGAAGAGCCTGCTAAAGTTGCACAGTTGGTTGAACTGTGTTGAAACATGCGAGCCGCCTTGAATTTCGATGCATAATAATAAGCTActtcagagtttcaaaaaagACATGCGCATGTCGGGATAATAAACAGtaatatattaaaaatacaaaagcatTTTGAACGAAAATTCCTGTAACTATTTTCCATAACGAAGAAAATTGTTCGTCGGGTTTTATTCTGATATGCATGTGTTTCTTGATTCTCCTAACTGGTTTACATGAGGAGGTTTTTGATTATCATATGTCACAGGGTGGCTTTTTTATGTTTACAGCAGTGGGATTTGTCACAATGTGGTTTGATTTTACATCGAGTAGgaaaaataatctatttttgAAAACAACTTTGTTCGTTTGCTTGAATTGAAATGAAATCTTAACAGTGCAAAAAGTACAatggggaagatatctgtttatgAACAttggctctggttggcacattaatgacaataggtgacgtcaactaTATCTTCGCTATACCTTTGAAAGGAAGATAAGAAAGCGAAGGGAAAGCGTTTGtgtccgaaataaatgaatttcagacTCAGTCCACGCGTATCCAGATATATTCGAAAACGGACACTTTTTCCTCCGTTTTTGTCTCCCGTCCACGGGAATACGAGACCAGTTGTAGATTTTTGTCAAATGGGGGTGAATCGTATTCGTGTGGACCGGTGAAAACATGATGACATCATAGGTCGTGATCAAACGAAGAGCGCATGCTCTATAGCTTGAGGGTAGCGTTTTCAATCGTTTTTTGCGTATTCTTGTTGACCGGTAAATACGATTCGAAAACGCTTCGTGTGGacgcagatttttttttttcataaacgaAGGAAAGCAATTCCGTTTTCGAAAATACCCGCATACGTTTGGAAGGGGCTTCAAAACACGGACGCCGCAATCTTGAATGATTGTAATTACGTGTTACTCTCGCTCACTTGTTACAGCCAGCCCTGCAACTTGTATCACAACGACTTTTTGACATGTTGCCTTTACCTCGtgtgatcatcgaaaacgaGGTAAGTTGCGCATGGTTGTATGAATCGCTGCTTGCACAACAAAATTTCGACACAAGTTGCAATTAAATAATTGCATCCCGCACTTAGATATCTCTCGTTTTTTCTACTTCCAATGTAGTCCAGTTACAGTTTTTTCGGGTTTCTAACAAAAAGTGACTTTTGATATCTACATGTTTAGATACTGCTTGCTTGCATGCGCTCTCTtaaatgagcaaaacaaaggaccagacctcctgagtattatcacatgatctgtatttgggaaaagaaaatgtacaagcgaaaaaggtctattaggaACAAATCCTGTGTAGAAACTATGTTGTAAATCTGGAGACTGAGACCGCCTCTTTAACTTTCTGGTGGTGCGAATTCCTGTGAGTAGAGTAGTATTCTTGTGTTCCGAGAGCATACACGTAAATTTCTCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4FV08	Glucosamine-6-phosphate deaminase 1 OS=Bos taurus OX=9913 GN=GNPDA1 PE=1 SV=1
A4IHW6	Glucosamine-6-phosphate deaminase 2 OS=Xenopus tropicalis OX=8364 GN=gnpda2 PE=2 SV=1
Q9CRC9	Glucosamine-6-phosphate deaminase 2 OS=Mus musculus OX=10090 GN=Gnpda2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006163 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01182 all species →	Glucosamine_iso	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004547 all species →	Family	Glucosamine-6-phosphate isomerase	Interproscan
IPR018321 all species →	Conserved_site	Glucosamine-6-phosphate isomerase, conserved site	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR006148 all species →	Domain	Glucosamine/galactosamine-6-phosphate isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11280 all species →	GLUCOSAMINE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004342 all species →	Molecular Function	glucosamine-6-phosphate deaminase activity	Interproscan
GO:0006044 all species →	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006043 all species →	Biological Process	glucosamine catabolic process	Interproscan
GO:0006046 all species →	Biological Process	N-acetylglucosamine catabolic process	Interproscan
GO:0019262 all species →	Biological Process	N-acetylneuraminate catabolic process	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02564	nagB, GNPDA; glucosamine-6-phosphate deaminase	EC:3.5.99.6	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720368.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

61.5Max TPM

28.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	28.81	61.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	61.46
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	53.80
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	44.78
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.78
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	41.96
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	39.24
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	38.93
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	37.63
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	37.38
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	36.86
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.86
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	34.85
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	34.79
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	34.70
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	33.10
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	33.02
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	32.74
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	32.43
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	31.97
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	31.15
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	30.38
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.80
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	28.75
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	28.54
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	28.39
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	27.61
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	27.26
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	22.92
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	22.17
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	21.96
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.