Gene detail

Detailed information of XP_068720385.1 in Montipora capricornis

Genomic Location: chr9:24110934...24138406
NR annotation: XP_044176573.1, PDZ domain-containing protein 8-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138017086

ATGTTTATAGCTTTAATTCTCGCCTTCTTGATCGGAGTATTTTCTGTTTTGCTTTTCGAGGCCTTTTTGCTTTTCAAATGGTGGACATCAACGGTAGAACATCCTCGAAAACTGTACCCTGAACGCACGAAAGTCATCAATCCTGAGTTCATTGCAGATTATTTTAAGAAAGATAGTGCCACTGAGCAAGAATCATGCATGAGTTTGAACTTTCTGTTGGCCTTTTTGTGGAGAGAATGGCGAGATTCTCCAAAAATGAAATCATTCTTTTTACAAAAAATTAATTCCGAGTTCTCAGAGCTTGTAAAAGGAAAAGCTGCCAGCAAACTGATAGCGCAAATAACCATTGATGAACTGTCTCTGGGTACATCTCTGCCAGTTATTAAAGGTGCTACAGTAATGAAGATAGGGACAAAAGATCCCAAGGAGGTCCCCCAGGAGTTGGACATTGCTCTAGAACTTGAATACTCAGGGGGGTGCCACATGGCAATACAGGTTGATCTTGTATTCAGCAAGTCTGTGTACATTGCAGTCAAGTTGGCCCATCTCCGGGGTCGTGCGAGGCTTCAGTTCAGCAGACACCCCCTCACCCATTGGTCCTTAGCATTCTATGAGGAACCAGAAGTGGAATTTCAAGCAGAATCTCAGTTTGAAGGAAAAAACCTACCTCAGCTGACCTCCCTCATCACAAGTCACCTTCGTAAATCACTACAAAAGAAGCACACACTTCCCAGCTATAATGTCCGGCACAGTCCTTTCTTTGAGCAGCTCTCACCTCAAGATGAAACCCAGGAGGTCTATGTTCATAATGGTCTGGTTACTGTTGGTGCTTTAGAAGTCACTGTGCTGGGGTGTAGTCGTCTACCTGAATTGGAGAACTGGGCGTGGCAGTATTGTAGCCTTTCTGTAGACTTGCTCCCATGGAGTAGGCTTGCAGAGAGTAAAAGAGCCAGATGGCCTACATTTGAGGTTCCAATAAGTCGAGAAACCAATGACATTTCGTTTGGTCTTACACTCAGTACAGAGATCAATGAAGATGATGTTGGTAAAGCCATTGTAATCGAGACTATAGTCATTGATTCTCCAGCTTATTCAGCCGGTGTCATGGCGAAAGACATTCTTGTGGCTATAGATGGACACAAGATAGAGTCGCTGAAACAAGCTGCCAAGATGATCAAGAACAAAATCAGATTCACTGCCACAGTTCAACGACCTCCAACCAGACTTATTCAACAACTGAAGCAGGACATCCCAGAGAAAGAACAGGTAAAGACTGTGGTTGACTATAAGAACGTGGCGCTGAGCAATAACAGCGAGTCAGAGGATGAATTCGTCAACATTGTGGTGCCATTGTTCGAAGACGCAGACAGTGAGATGGCGAAATCTGCTGTGCGAGAAATGCTATCAACCAGTACAGAGCTGGGACAAAAGGCGGAAAAGAAGCAGAAATTAAAACAAGGAAAAAAGGCTCCCCATGGGGCTGAAAATAAAGAATCCTGTGCTCAAGCTAAGTCTGGGATTGAAGATCAAGTTACAAGAGATCAAAAAGCAAATGGATTGCCGGTTATCGACAAAAAGCAAGAGTCGTCAATGATTTTGAAAAAGACCTCCGACCAGGTCGCTCAGGAAATGGACAAGAGAACTGTACCGTCTAATGGAACAATTGATACACCCACTTCAGGAATCGAACAAGCTTCTGCGCCTTCACAGACAGTTCTGGATGGACCAGATAACGTGAAAACGAAGCTGGTTCCGGCAAGCGCGGAACCAGTGTGGAATGAAACTGTTAAGTTCGACATTCTCAAAAATGACCAGTATCTTAATGTCTGCATTTGGTGCAAGTCGCAAGAGAAAAACGAGAAGGACTTGTTACTGGGATACGTAACCATTCCTTTGATGGATATTGCCTTTCAATGCCTGTCTTTGTCGTCCAAGAGGCACGAACAATGTTATGTGCTGGCTACTCCACATTCAGACAGAATCATATCAAATCAGCCCTACCTACGTAATCACCCTGATCTTAAGGAGAGGCTTTATTGCGGTGATGTCACACTGATATTTCGACACATGCCGTCACTGGTTGACTGCGATGAAACCATATTGGAGAAGGTGGACTTGCTGGCGGAATCCGAACACAAGGATGAAAGCCAAGGAAAGGACACTCTTGAAAGCCTGGAGCCCCCAAAGCATCAGTTTATTTTAACACAGTTCCATTTCCCCACAAGATGTAGCTACTGCAATAAAAAGGTTTGGACCAAAGTTGCCTTCCAGTGTAGAATTTGTGCCATGATTTGCCATAAGAAGTGTTTACAAAGTTGTATGAGTTACACGCATTGCGTCCATGCGTCCAAATCAACGCCTACTTGGTTTTCAAGAACGGAAGCCAAGTCAGGAAACAATTTTAAGAAAGAGAAAGAAGGCCAAGACAGTAAAGATGGGCAGGAATCAATTGCAGAGGGTTCCTCTGAATCAGAGCTGGACCGTAACGTTAAGAAACGAGAAAAATGCTCTGATAAAGACGAAAGGAAACTCTTGGTTACCAGCGATCAAACGGAAACCAGCGAAGACGCAGAGTACGGTAGCAGCGACCAAATACCGGAAGCGGAAGAAGAAGATTGGACCACGAAAGATAACATTCTGAAAGCGAATGACATTGCCAAGACTTCCGAAAGAGTTCGAGAGGCTGGCAGGGAACTGTTTTGTAATCTTCCGCCGGAGGTTCGCAAAAATAAGCTGGAAGACATGATGAACAGATTACAAGTGGAAATTGATGAAGAGAACGGAACGCAGACCGAGTTGTATGAGCAAAGAAGGCGGGCGAAGGAAAGGAAACAAAAAGCCGTCATTGAGTCTCTTTTGGAGAAATCTGAAGAGAGAAGCCAAGCACTTGCGATGCTGATGTTGCAGTACTGTGCTGGATATCAGAGCTGTGTTGAAGCAGAAGAATGTGACCGATATCAACTCTAA

Transcript

rna-XM_068864284.1

AGGTCTCTTCCTTCTAACAAAAACATGCTGCGCTGCAGTACATAGTGAGGGATTTGCCCATGTTTATAGCTTTAATTCTCGCCTTCTTGATCGGAGTATTTTCTGTTTTGCTTTTCGAGGCCTTTTTGCTTTTCAAATGGTGGACATCAACGGTAGAACATCCTCGAAAACTGTACCCTGAACGCACGAAAGTCATCAATCCTGAGttcattGCAGATTATTTTAAGAAAGATAGTGCCACTGAGCAAGAATCATGCATGAGTTTGAACTTTCTGTTGGCCTTTTTGTGGAGAGAATGGCGAGATTCTCCAAAAATGAAATCAttctttttacaaaaaattaattccgaGTTCTCAGAGCTTGTAAAAGGAAAAGCTGCCAGCAAACTGATAGCGCAAATAACCATTGATGAACTGTCTCTGGGTACATCTCTGCCAGTTATTAAAGGTGCTACAGTAATGAAGATAGGGACAAAAGATCCCAAGGAGGTCCCCCAGGAGTTGGACATTGCTCTAGAACTTGAATACTCAGGGGGGTGCCACATGGCAATACAGGTTGATCTTGTATTCAGCAAGTCTGTGTACATTGCAGTCAAGTTGGCCCATCTCCGGGGTCGTGCGAGGCTTCAGTTCAGCAGACACCCCCTCACCCATTGGTCCTTAGCATTCTATGAGgaACCAGAAGTGGAATTTCAAGCAGAATCTCAGTTTGAAGGAAAAAACCTACCTCAGCTGACCTCCCTCATCACAAGTCACCTTCGTAAATCACTACAAAAGAAGCACACACTTCCCAGCTATAATGTCCGGCACAGTCCTTTCTTTGAGCAGCTCTCACCTCAAGATGAAACCCAGGAGGTCTATGTTCATAATGGTCTGGTTACTGTTGGTGCTTTAGAAGTCACTGTGCTGGGGTGTAGTCGTCTACCTGAATTGGAGAACTGGGCGTGGCAGTATTGTAGCCTTTCTGTAGACTTGCTCCCATGGAGTAGGCTTGCAGAGAGTAAAAGAGCCAGATGGCCTACATTTGAGGTTCCAATAAGTCGAGAAACCAATGACATTTCGTTTGGTCTTACACTCAGTACAGAGATCAATGAAGATGATGTTGGTAAAGCCATTGTAATCGAGACTATAGTCATTGATTCTCCAGCTTATTCAGCCGGTGTCATGGCGAAAGACATTCTTGTGGCTATAGATGGACACAAGATAGAGTCGCTGAAACAAGCTGCCAAGATGATCAAGAACAAAATCAGATTCACTGCCACAGTTCAACGACCTCCAACCAGACTTATTCAACAACTGAAGCAGGACATCCCAGAGAAAGAACAGGTAAAGACTGTGGTTGACTATAAGAACGTGGCGCTGAGCAATAACAGCGAGTCAGAGGATGAATTCGTCAACATTGTGGTGCCATTGTTCGAAGACGCAGACAGTGAGATGGCGAAATCTGCTGTGCGAGAAATGCTATCAACCAGTACAGAGCTGGGACAAAAGGCGGAAAAGAAGCAGAAATTAAAACAAGGAAAAAAGGCTCCCCATGGGGCTGAAAATAAAGAATCCTGTGCTCAAGCTAAGTCTGGGATTGAAGATCAAGTTACAAGAGATCAAAAAGCAAATGGATTGCCGGTTATCGACAAAAAGCAAGAGTCGtcaatgattttgaaaaagaccTCCGACCAGGTCGCTCAGGAAATGGACAAGAGAACTGTACCGTCTAATGGAACAATTGATACACCCACTTCAGGAATCGAACAAGCTTCTGCGCCTTCACAGACAGTTCTGGATGGACCAGATAACGTGAAAACGAAGCTGGTTCCGGCAAGCGCGGAACCAGTGTGGAATGAAACTGTTAAGTTCGACATTCTCAAAAATGACCAGTATCTTAATGTCTGCATTTGGTGCAAGTCGCAAGAGAAAAACGAGAAGGACTTGTTACTGGGATACGTAACCATTCCTTTGATGGATATTGCCTTTCAATGCCTGTCTTTGTCGTCCAAGAGGCACGAACAATGTTATGTGCTGGCTACTCCACATTCAGACAGAATCATATCAAATCAGCCCTACCTACGTAATCACCCTGATCTTAAGGAGAGGCTTTATTGCGGTGATGTCACACTGATATTTCGACACATGCCGTCACTGGTTGACTGCGATGAAACCATATTGGAGAAGGTGGACTTGCTGGCGGAATCCGAACACAAGGATGAAAGCCAAGGAAAGGACACTCTTGAAAGCCTGGAGCCCCCAAAGCATCAGTTTATTTTAACACAGTTCCATTTCCCCACAAGATGTAGCTACTGCAATAAAAAGGTTTGGACCAAAGTTGCCTTCCAGTGTAGAATTTGTGCCATGATTTGCCATAAGAAGTGTTTACAAAGTTGTATGAGTTACACGCATTGCGTCCATGCGTCCAAATCAACGCCTACTTGGTTTTCAAGAACGGAAGCCAAGTCAGGAaacaattttaagaaagagaaagaaggcCAAGACAGTAAAGATGGGCAGGAATCAATTGCAGAGGGTTCCTCTGAATCAGAGCTGGACCGTAACGTTAAGAAACGAGAAAAATGCTCTGATAAAGACGAAAGGAAACTCTTGGTTACCAGCGATCAAACGGAAACCAGCGAAGACGCAGAGTACGGTAGCAGCGACCAAATACCGGAAGCGGAAGAAGAAGATTGGACCACGAAAGATAACATTCTGAAAGCGAATGACATTGCCAAGACTTCCGAAAGAGTTCGAGAGGCTGGCAGGGAACTGTTTTGTAATCTTCCGCCGGAGGTTCGCAAAAATAAGCTGGAAGACATGATGAACAGATTACAAGTGGAAATTGATGAAGAGAACGGAACGCAGACCGAGTTGTATGAGCAAAGAAGGCGGGCGaaggaaaggaaacaaaaagccGTCATTGAGTCTCTTTTGGAGAAATCTGAAGAGAGAAGCCAAGCACTTGCGATGCTGATGTTGCAGTACTGTGCTGGATATCAGAGCTGTGTTGAAGCAGAAGAATGTGACCGATATCAACTCTAATCTGCCACATCTCCGGTGCAGTCAGCATAATGCTAATGAAAGGGCAAACAGCCGTATTTTAATCCCCATCGTAcgtgaaaaatgaaaaagacgttaagcacgcgacgtttttttagccgcggacagcaaccggaagtgatgTTTTTTCCTTGTTGAGCCACTttcatacacctttttccaaaatgaccgccatttagatgtttttattcaaattagaccttgatgcctcgttcaaggcaaaatattcttttgaattttaaacttaagaacgaggcagcaagggctaatttgaataaaaacaaaagaatatttaaattgcggccattttggaaaagtgtgtatatgaccttgaaaaataaacgtaaaaagagaacgtaaacaaaaatgcaaaacattgaattggcttatcgaacaaaaacaaacgagcgcgaattttcattggcttagcgaacgcggatgcagaCAACGTAATCTCTCCATTGTAACTTTCTGGAAAGCTAttcggcatttcgctttgacgtccatttgaaatgcagtaatgtgattgggcaatcgaactgtttactgtccatattaggagtttcctttgcgggaataaggagaagctttggtttaatcttgccaaacattggtccgtgaaacaaactGCGAAccctttttcaaggtcatacgaaagtcgctctatcttGTCTTAGCACTACCCATTTATCGTTTATATTGCCAAGTGTCTTTTCTCTGTGAGAGACGATTACTTTTACAGTCTTGGGAGGGACTGCTGTCTGGGTTTGTgaaattttcacttccggtttccgttcCTGGCTTAggaacgtcgcgtgcttaagctaCCTAAACTTAATACATGAACTTGCGAaagtaaaaaggaaaaatgatcgAAATTTCCCTTGAATATAGTTCTGAAAtttcttacatgtacaattaCTCTTGCGCAGTATAAAATTCAATTTCACTTTTGGCATCATTTTTATCATTGCTGTCTTGAAAGATCTTTCGAAGAataaccttttattttcttttgtttttgatttctaAAGTTGCCGAGAATTTCaaactgaatttttttattattattatgagaaaATGCGGTTCAACTCAAGACTAAAGAGAACCAGTCGTTGATTTCTTAAGCAGAGAATCATGAGCATATTTATTACCGGACAAAAATAAACTTCTTCACATCAAGAGTAATTTATGAAATAAAGTCGACTTGAATTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9EJ80	PDZ domain-containing protein 8 OS=Mus musculus OX=10090 GN=Pdzd8 PE=1 SV=1
Q8NEN9	PDZ domain-containing protein 8 OS=Homo sapiens OX=9606 GN=PDZD8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR039275 all species →	Family	PDZ domain-containing protein 8	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21519 all species →	PDZ DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0044233 all species →	Cellular Component	mitochondria-associated endoplasmic reticulum membrane contact site	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990456 all species →	Biological Process	mitochondrion-endoplasmic reticulum membrane tethering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24060	PDZD8; PDZ domain-containing protein 8	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720385.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

35.1Max TPM

13.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	13.47	35.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	35.05
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	28.11
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	27.88
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	22.60
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	22.52
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	21.93
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	19.46
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	19.11
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	18.62
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	18.25
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.06
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.76
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	15.63
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.53
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	15.48
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.03
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	14.34
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	14.23
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.95
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.25
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	13.23
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.33
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.13
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.09
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.85
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.73
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.83
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.76
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.37
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.