Gene detail

Detailed information of XP_068720403.1 in Montipora capricornis

Genomic Location: chr9:1748254...1916213
NR annotation: CAH3039643.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138017101

ATGCAAGTGAATCTTCACGCAGCGATAACTATCACAGCAATAGCTACACAAGGTTTTGTGTACAGAGACAAGCAGTATTTTATCAAATCATATTATCTGAGCTATGGCGATGATGGAAACAATTGGGTAAATTATACCATTCAAGGAATGACAAAAGTGTTTCAAGCCAATGTAGATGCCAACAGTATTGTTAAAGTTGGTTTTAATTCTTCAGTCGTTGGGAAATTCATAAGGGTACATCCTACAAACTGCTCTATTAGGTGTGCTTTGAGAATGGAGCTTTATGGTTGCAATTCCACAGAAGGTATACCAGGCAGACCATCCCCTCCAATAACAACATCTATTCTGGCAACATCCATTAACATTACATGGAGTGCACCTGATTATGTTGGTGATGGAATTACAGGGTACAATGTGCGGTGGGAGGATGTTGGAGCATCAACACCTTCTCAAAAGGTTATTGTAGGAAACAAATCTAGAGTAGCTACACTCAGTAACATATCACCATACACCAACTATACCATTGAAGTACAGGCATTCAATTGGAAAGGAGACAGCCCTTGGTCGTTTCCACTGACAGTGCAATCCTCTGAATCTGTTCCCAGCTCTGATCCAGTCATTGTGAAAGGGCAAAATGGAACAAAAGCAGAGGATGCTCACACGATTAGAGTTGTCTGGGAGGAAATACCAGAAAAGGACCAAAATGGCATTATTACTGGCTACACAGTGTTTTACAATGAGACAGGTCAATCTCAATATTTCAGTAAGAATGCAACTGCAAGTCAAACGAGTGCTTCAATTGGTGGACTGAAACCTTTCACCAAGTACTGCATTAAAGTAGCAGGCTATACCAAGGTTGGAAGGTCACCATTAACGGACCCATGTTATGAAGTGGAAACACTGCAAAAAGGTCCTAGTCATCCACGGAATGTGATGCTCCAGGCCAAATCATCTACATCCATTCTTGTATCATGGAAGGAACCAGCTTTGCAAAATGGAGAAATAACCAATTACATAATATATTATAGAAAACAAGATGGCCCGGAAACAGAAGCTCAAGTCACGGGAAGTACTTTTCAGAGGCTATTGACTGACTTGAGAAAATTTACCACCTATTACATCAAAGTGAGAGGGAAAACTACAGAGCTGGGAAATGCTTCAAGACTACTGAATGCAACAACGTTTGAGGGCCGCGCAAGTCCTCCAACAGAATTACGCGGGGAGGTCACATCAGGCACAAAAGTCGTCGTTTTTTGGAAAGAGCCTTCAGATAAGAATGGTGTTATCCGAAAATATCGCATAAAGATCTACAATACCAAGACTGGAGAAGAAGTTGGTAGTATAGAGATCGATGCACAAGAATATAGCAATGGTTTTAAAAAGGAAGTAACCAAACTGACGCCATATACAACGTACACGTTTGCAGTACAGGCAGTTACCACTGAACCTGGAGAGATGGCAAACTTCACTGCTAGAACATATGGAGAAGTTCCCGGTAAACCAAGAGAGGTGGAAGCAACGCTGGATGATGGTAACATATACGTATTTTGGGAGGAGCCAAGCAATCCCAATGGTATAATTCTTAAATACCAGATTTACTGCGTAGGGAAACGGGAGTATGATCGTGCCTTCCAAAGCAACTTGGAAATATCAACTACCGAGGATGTACGCTTTGAGGTGATCAAGAAACCACAGCTTAGTTCTGGAACAGAGTTTACAGTGTATATTACTGCATTTACTTGGAAAGGAGAAGGCAGCCAAAGTGAACACATGGTAGTGAATACACCTGCCGTCGCTCCGCCTCCACCAACGGAACCACAGGTTAACTATACGGCCACCACATTACACACCATAACCATTACAATTCAGCCGGCATCCGACACCAATGGAAAAGTGATCTTTCATCATGTCATAGTTGAAATTCTTGGAAAAGTCACCAAACGTCAGACATCTACTTTACCAGACAATATTAACAATTACGAGGAAGCCAGGACAAAGGGAGAAACATTTTACATGGCTGCAAGTTTATCGCGGGATGCACTGAACACTAGTAGAGTATTTGTTTTAGGCGACGGAGAGACATACGGAGATTACAAAAATGTTCAATTGGAACCAGGGACAAGGTACAAGGCGTACATAAGAGGAGTGACTGAGGATAACGGGAGATTTTTGTATGGATCGCCAACTGAAATAAGCTTACCACCCACTCTTATTCCCGGTAAACCAAGAAAGGTGATAGCAACGCTGGTTGATGGTAACATAAACGTAGCTTGGGAGGAGCCAATCAATCCCAATGGTATAATTCGTAAATACCAGATTTACTGCGTAGGGAAACGGGAGTATGATCGTGCCTTCCATCGCAACTTCAGAGTAATAACTAACGAGGCTGTACGCTTTGATGTGATCAAGAAAGCAGACCTTAGTCCTGGAACAGAGTTTACAGTCTATATTACTGCATTTATTAGCAAAGGAGAAGGCACCCAAAGTGAACACATGCTAGTGAATACACCTGCCGTTGCTCCGCCTCCACCAACGGAACCACAGGTTAACTATGAGGACACCACATTACACACCATAACCATTACGATTCAGCCGGCATCCGACACCAATGGAAAAGTGATCTTTCATCAAGTCATAGTTGAAATTCCTGGAAAAGTCACCAAACGTCAGACATCTATTTTACCAGACAATGTTAGCAATTACGAGGAAGCCAGGAGAAGGGGAGACAAATTTTACATGGCTGCAAGTTTATCGCGGGATGCACTGAACACTAGTAGAGTATTTGTTTTAGGCGACGGAGAGACATACGGAGATTACAAAAATGTTCAATTGGAACCATGGACAAGGTACAAGGCGTACATAAGAGGAGTGACTGAGGATAACGGGAGATTTTTGTATGGATCGCCAACTGAAATAAGCTTACCACCCACTCTTAGTACGTCATGCGAGTTTGTATTTTTTAATTAG

Transcript

rna-XM_068864302.1

AAAGGATGGATTGCTGATGACAAGGATAAACACCCTTGGATGCAAGTGAATCTTCACGCAGCGATAACTATCACAGCAATAGCTACACAAGGTTTTGTGTACAGAGACAAGCAGTATTTTATCAAATCATATTATCTGAGCTATGGCGATGATGGAAACAATTGGGTAAATTATACCATTCAAGGAATGACAAAAGTGTTTCAAGCCAATGTAGATGCCAACAGTATTGTTAAAGTTGGTTTTAATTCTTCAGTCGTTGGGAAATTCATAAGGGTACATCCTACAAACTGCTCTATTAGGTGTGCTTTGAGAATGGAGCTTTATGGTTGCAATTCCACAGAAGGTATACCAGGCAGACCATCCCCTCCAATAACAACATCTATTCTGGCAACATCCATTAACATTACATGGAGTGCACCTGATTATGTTGGTGATGGAATTACAGGGTACAATGTGCGGTGGGAGGATGTTGGAGCATCAACACCTTCTCAAAAGGTtattgtaggaaacaaatctagAGTAGCTACACTCAGTAACATATCACCATACACCAACTATACCATTGAAGTACAGGCATTCAATTGGAAAGGAGACAGCCCTTGGTCGTTTCCACTGACAGTGCAATCCTCTGAATCTGTTCCCAGCTCTGATCCAGTCATTGTGAAAGGGCAAAATGGAACAAAAGCAGAGGATGCTCACACGATTAGAGTTGTCTGGGAGGAAATACCAGAAAAGGACCAAAATGGCATTATTACTGGCTACAcagtgttttacaatgagacAGGTCAATCTCAATATTTCAGTAAGAATGCAACTGCAAGTCAAACGAGTGCTTCAATTGGTGGACTGAAACCTTTCACCAAGTACTGCATTAAAGTAGCAGGCTATACCAAGGTTGGAAGGTCACCATTAACGGACCCATGTTATGAAGtggaaacactgcaaaaagGTCCTAGTCATCCACGGAATGTGATGCTCCAGGCCAAATCATCTACATCCATTCTTGTATCATGGAAGGAACCAGCTTTGCAAAATGGAGAAATAACCAATTACATAATATATTATAGAAAACAAGATGGCCCGGAAACAGAAGCTCAAGTCACGGGAAGTACTTTTCAGAGGCTATTGACTGACTTGAGAAAATTTACCACCTATTACATCAAAGTGAGAGGGAAAACTACAGAGCTGGGAAATGCTTCAAGACTACTGAATGCAACAACGTTTGAGGGCCGCGCAAGTCCTCCAACAGAATTACGCGGGGAGGTCACATCAGGCACAAAAGTCGTCGTTTTTTGGAAAGAGCCTTCAGATAAGAATGGTGTTATCCGAAAATATCGCATAAAGATCTACAATACCAAGACTGGAGAAGAAGTTGGTAGTATAGAGATCGATGCACAAGAATATAGCAATGGTTTTAAAAAGGAAGTAACCAAACTGACGCCATATACAACGTACACGTTTGCAGTACAGGCAGTTACCACTGAACCTGGAGAGATGGCAAACTTCACTGCTAGAACATATGGAGAAGTTCCCGGTAAACCAAGAGAGGTGGAAGCAACGCTGGATGATGGTAACATATACGTATTTTGGGAGGAGCCAAGCAATCCCAATGGTATAATTCTTAAATACCAGATTTACTGCGTAGGGAAACGGGAGTATGATCGTGCCTTCCAAAGCAACTTGGAAATATCAACTACCGAGGATGTACGCTTTGAGGTGATCAAGAAACCACAGCTTAGTTCTGGAACAGAGTTTACAGTGTATATTACTGCATTTACTTGGAAAGGAGAAGGCAGCCAAAGTGAACACATGGTAGTGAATACACCTGCCGTCGCTCCGCCTCCACCAACGGAACCACAGGTTAACTATACGGCCACCACATTACACaccataaccattacaattcaGCCGGCATCCGACACCAATGGAAAAGTGATCTTTCATCATGTCATAGTTGAAATTCTTGGAAAAGTCACCAAACGTCAGACATCTACTTTACCAGACAATATTAACAATTACGAGGAAGCCAGGACAAAGGGAGAAACATTTTACATGGCTGCAAGTTTATCGCGGGATGCACTGAACACTAGTAGAGTATTTGTTTTAGGCGACGGAGAGACATACGGAGATTACAAAAATGTTCAATTGGAACCAGGGACAAGGTACAAGGCGTACATAAGAGGAGTGACTGAGGATAACGGGAGATTTTTGTATGGATCGCCAACTGAAATAAGCTTACCACCCACTCTTATTCCCGGTAAACCAAGAAAGGTGATAGCAACGCTGGTTGATGGTAACATAAACGTAGCTTGGGAGGAGCCAATCAATCCCAATGGTATAATTCGTAAATACCAGATTTACTGCGTAGGGAAACGGGAGTATGATCGTGCCTTCCATCGCAACTTCAGAGTAATAACTAACGAGGCTGTACGctttgatgtgatcaagaaaGCAGACCTTAGTCCTGGAACAGAGTTTACAGTCTATATTACTGCATTTATTAGCAAAGGAGAAGGCACCCAAAGTGAACACATGCTAGTGAATACACCTGCCGTTGCTCCGCCTCCACCAACGGAACCACAGGTTAACTATGAGGACACCACATTACACACCATAACCATTACGATTCAGCCGGCATCCGACACCAATGGAAAAGTGATCTTTCATCAAGTCATAGTTGAAATTCCTGGAAAAGTCACCAAACGTCAGACATCTATTTTACCAGACAATGTTAGCAATTACGAGGAAGCCAGGAGAAGGGGAGACAAATTTTACATGGCTGCAAGTTTATCGCGGGATGCACTGAACACTAGTAGAGTATTTGTTTTAGGCGACGGAGAGACATACGGAGATTACAAAAATGTTCAATTGGAACCATGGACAAGGTACAAGGCGTACATAAGAGGAGTGACTGAGGATAACGGGAGATTTTTGTATGGATCGCCAACTGAAATAAGCTTACCACCCACTCTTAGTACGTCATGCGagtttgtattttttaattAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13332	Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens OX=9606 GN=PTPRS PE=1 SV=3
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1
Q64605	Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus OX=10116 GN=Ptprs PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068720403.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720403.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

24TPM > 0

1Conditions

2.6Max TPM

0.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	24	0.83	2.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	2.64
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	2.38
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	2.35
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	1.67
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.64
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.52
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.51
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.37
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.36
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.33
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.28
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.20
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.17
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.10
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.02
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.00
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.00
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.90
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.82
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.78
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.54
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.52
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	0.43
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.40
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.