Gene detail

Detailed information of XP_068720483.1 in Montipora capricornis

Genomic Location: chr9:7411564...7414058
NR annotation: XP_044181765.1, uncharacterized protein LOC122947025 isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138017217

ATGGATACCCTTGAATCTGCCGTTAGGTTGATGAAACCTGGGTGCTTCATGTCCTCCATAGACCTACATAATGCTTACTATTCCATCCCTATATCGCCTAGCTTCAGAAAATATCTCAAGTTTGCATGGAGGGGTTCTCTGTTCCAGTTTTGTGGCCTTCCCATGGGTTTGACAAGTAGTCCTCGCATCTTTACTAAGGTGTTAAAACCAGTTTTTGCCACCCTGCGCTCCCAGTATGGACATAATTGTTTGGGTTACATCGATGACTCTTTTTACACGGAGGACTCTGCCGAGGACTGCCGTGAGGCTACCTTACATGCTACCCAAATATTTACTAGCTTGGGTTTTGTGATTCACCCTACCAAGTCTGTTTTTCACCCCGCACAATGCCTAGAATTCTTGGGGTTTTTGTTGGACTCTACGTCTATGACAGTTCGTTTAACCCCGAAGAAGGCCGACAAGATCGTTGTTTTGTGTCGGAAAGCTTTGCGTGCCCGGGAATTATCAATCCGTGAAGTTGCCTCCTTAATAGGAACTTTAGTGTCCGCTTTCCCTGGGGTGGAGTTTGGTCCCCTGTATTATAGACACTTGGAATGGGACAAAGATTTGGCACTGAAGTCTGCCCTAGGAGATTTCGATGTCAGCATGTCTCTGTCTGCCGACAGCATTAACGAGTTAGAGTGGTGGGTCACCGCAATCCCGACAGCTTTCCGGGTTATTGACCATGGTTGCCCAAATATCACATTGACAACAGATGCTTCACGTATAGGTTGGGGCGCCACAACCCACCAAAGCCAAACCCAGGGCCTTTGGTCCCGAGCAGAAACTGAATATCACGTTAATATTCTTGAATTGCTCTCCGTGAAGTTGGGCCTTATGTCCTTACTCGGGTCAGTGTCCAATCAGCACATCAGGATCATGGCTGACAATATGACTGCAATTTCTTACATCAATGCCAAGTGGGGATGCAGGAACTGGGAATGCAATGCCATCGCTAAAGCGATTTGGTTATGGGCCATTAAAAGGAATAATTGGCTTTCCGCTGCACACCAACCGGGGCGGTTTAATGTGACTGCAGACTCCCTGTCACGCCATTTTGAAGATGGAATAGAGTGGGAACTGAATCGTGGCCTGTTTGAGAAAATATGTGCTGTCTTTGGTGTTCCCCAGATCGACCTATTTGCTAGTAGAGTCAACCATCAAACTAGCGCTTATGCTTCCTGGAAGCCTGACCCACATGCATCCTATGTGGATGCTTTCTCTATGCCTTCAGAAGCTGGTTCTGGAGCAAGCAACAGCAATTATCATTGTACCACTTTGGACCACACAGACATGGTTCACCAACCTTCTGAGTCTCCTGATGGATGTGCCCAGAATCTTTCGAGTAACCAAGAAGGTGTTGTCTCATCCAGTGCGCGGAGATGCCCACCCTCTGTGCCCGAAACTGCATCTTCTGGCATGCAAGGTGTCAGGCGTCAGCTCATTGAGTGCAACATTCCGGTCGAGATTGCCGACGTGCTTATGTCTTCTTGGAGACCAGCCACGAGAAAACAGTATGATGCTCACATCCGCAGATGGTGTGCATTTGCGCTACAAAAGAAAATTGATCCACTGCATCCGAGTGTGAGCGACGTGTTAAAGTTTCTCCACACCTTTCGTGTGAACCAACTGTCATACTCAACGATTAATACAGCTCGCTCAGCGCTCTCAAGCTACCTGATGGGGTATCAATTTCCTGGTTGTCACTACACGGTGGCTAACCATCCCTTTATAGTGCGCTACCTGAAGGGTGTGTTCAACTGTTGCAAGCCAGCTCCGCGATATCAGGAGACATGGGATGTTAAACCCGTCCTAGAGTACTTGGAGCGGTTGCATCCTCTGGATAAGCTCTCCCTCAAGGAACTGACCCACAAACTGACTATCTTGCTTGCTTTAACCTCGGGGCAGCGGTGTCAAACACTGTCTTTTTTGAGGGTTGATGCCATGAAGAAAACTCCAGATTATTATTTATTCTACGTCCGGGATCATGTTAAGCAGGGCAGACCTGGGAATGTTCTTTCGTCGTTTTTTGTTAGGAAGTACCCTAAAGAGCCACTTTGCGTTTATTCTACTCTTGAACACTATCTTGAGAGAACCCAGCTTGTCCGTGACTATGACAATGGCCACCTTCTCCTCTCATATGTCAAACCTTATCGGCACGTTGGTGCGAGTTCAATTGGACGATGGATTAAAACTGTTCTGGGAGCAAGTGGAGTGGACACAGCAAAGTTTAAGGCTCACAGCACCAGATCAGCAGCTGCATCGAAAGCAAGTCATTTGATTCCCACTGATGAAATCCTGAAGCACATCGGATGGTCTCGAGAATCAACTTTTCAGAAGTTCTATAACAAACCCGTTATTGCTGGAAATAGCTTTGCTGGAGCTGTGCTAAAATAA

Transcript

rna-XM_068864382.1

ATGGATACCCTTGAATCTGCCGTTAGGTTGATGAAACCTGGGTGCTTCATGTCCTCCATAGACCTACATAATGCTTACTATTCCATCCCTATATCGCCTAGCTTCAGAAAATATCTCAAGTTTGCATGGAGGGGTTCTCTGTTCCAGTTTTGTGGCCTTCCCATGGGTTTGACAAGTAGTCCTCGCATCTTTACTAAGGTGTTAAAACCAGTTTTTGCCACCCTGCGCTCCCAGTATGGACATAATTGTTTGGGTTACATCGATGACTCTTTTTACACGGAGGACTCTGCCGAGGACTGCCGTGAGGCTACCTTACATGCTACCCAAATATTTACTAGCTTGGGTTTTGTGATTCACCCTACCAAGTCTGTTTTTCACCCCGCACAATGCCTAGAATTCTTGGGGTTTTTGTTGGACTCTACGTCTATGACAGTTCGTTTAACCCCGAAGAAGGCCGACAAGATCGTTGTTTTGTGTCGGAAAGCTTTGCGTGCCCGGGAATTATCAATCCGTGAAGTTGCCTCCTTAATAGGAACTTTAGTGTCCGCTTTCCCTGGGGTGGAGTTTGGTCCCCTGTATTATAGACACTTGGAATGGGACAAAGATTTGGCACTGAAGTCTGCCCTAGGAGATTTCGATGTCAGCATGTCTCTGTCTGCCGACAGCATTAACGAGTTAGAGTGGTGGGTCACCGCAATCCCGACAGCTTTCCGGGTTATTGACCATGGTTGCCCAAATATCACATTGACAACAGATGCTTCACGTATAGGTTGGGGCGCCACAACCCACCAAAGCCAAACCCAGGGCCTTTGGTCCCGAGCAGAAACTGAATATCACGTTAATATTCTTGAATTGCTCTCCGTGAAGTTGGGCCTTATGTCCTTACTCGGGTCAGTGTCCAATCAGCACATCAGGATCATGGCTGACAATATGACTGCAATTTCTTACATCAATGCCAAGTGGGGATGCAGGAACTGGGAATGCAATGCCATCGCTAAAGCGATTTGGTTATGGGCCATTAAAAGGAATAATTGGCTTTCCGCTGCACACCAACCGGGGCGGTTTAATGTGACTGCAGACTCCCTGTCACGCCATTTTGAAGATGGAATAGAGTGGGAACTGAATCGTGGCCTGTTTGAGAAAATATGTGCTGTCTTTGGTGTTCCCCAGATCGACCTATTTGCTAGTAGAGTCAACCATCAAACTAGCGCTTATGCTTCCTGGAAGCCTGACCCACATGCATCCTATGTGGATGCTTTCTCTATGCCTTCAGAAGCTGGTTCTGGAGCAAGCAACAGCAATTATCATTGTACCACTTTGGACCACACAGACATGGTTCACCAACCTTCTGAGTCTCCTGATGGATGTGCCCAGAATCTTTCGAGTAACCAAGAAGGTGTTGTCTCATCCAGTGCGCGGAGATGCCCACCCTCTGTGCCCGAAACTGCATCTTCTGGCATGCAAGGTGTCAGGCGTCAGCTCATTGAGTGCAACATTCCGGTCGAGATTGCCGACGTGCTTATGTCTTCTTGGAGACCAGCCACGAGAAAACAGTATGATGCTCACATCCGCAGATGGTGTGCATTTGCGCTACAAAAGAAAATTGATCCACTGCATCCGAGTGTGAGCGACGTGTTAAAGTTTCTCCACACCTTTCGTGTGAACCAACTGTCATACTCAACGATTAATACAGCTCGCTCAGCGCTCTCAAGCTACCTGATGGGGTATCAATTTCCTGGTTGTCACTACACGGTGGCTAACCATCCCTTTATAGTGCGCTACCTGAAGGGTGTGTTCAACTGTTGCAAGCCAGCTCCGCGATATCAGGAGACATGGGATGTTAAACCCGTCCTAGAGTACTTGGAGCGGTTGCATCCTCTGGATAAGCTCTCCCTCAAGGAACTGACCCACAAACTGACTATCTTGCTTGCTTTAACCTCGGGGCAGCGGTGTCAAACACTGTCTTTTTTGAGGGTTGATGCCATGAAGAAAACTCCagattattatttattctaCGTCCGGGATCATGTTAAGCAGGGCAGACCTGGGAATGTTCTTTCGTCGTTTTTTGTTAGGAAGTACCCTAAAGAGCCACTTTGCGTTTATTCTACTCTTGAACACTATCTTGAGAGAACCCAGCTTGTCCGTGACTATGACAATGGCCACCTTCTCCTCTCATATGTCAAACCTTATCGGCACGTTGGTGCGAGTTCAATTGGACGATGGATTAAAACTGTTCTGGGAGCAAGTGGAGTGGACACAGCAAAGTTTAAGGCTCACAGCACCAGATCAGCAGCTGCATCGAAAGCAAGTCATTTGATTCCCACTGATGAAATCCTGAAGCACATCGGATGGTCTCGAGAATCAACTTTTCAGAAGTTCTATAACAAACCCGTTATTGCTGGAAATAGCTTTGCTGGAGCTGTGCTAAAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02899 all species →	Phage_int_SAM_1	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR004107 all species →	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617 all species →	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068720483.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720483.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

7TPM > 0

1Conditions

0.2Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	7	0.02	0.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	0.16
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	0.15
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	0.13
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.05
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	0.04
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.04
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.04
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.00
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.00
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.