Gene detail

Detailed information of XP_068720880.1 in Montipora capricornis

Genomic Location: chr9:35771880...35804398
NR annotation: XP_029212276.2, NAD(P) transhydrogenase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138017810

ATGACAATGTTCCTGCGACCTGGCCTCAGTGTAGTAAGACGATTCCATGGACAGTCTTTACTAGGAAGGAAGAGTGTATTGGGTATCTATGGAAGAGTAACCTGTTCACCCAAGTGTTCCGCTTTTAAGGATCCCCATTTCTATCCAAGGCTTTTTGCTGGGACCAACAGATTTTGTGCAAATGATTCCAAAGAAAAAATTCCTCCGGAGGCAATAACTGTTATTCCTTATAATGAGCTATCAATCGGAGTTCCAAAGGAAATTCATGAGGGGGAGAGAAGAGTAGCTTTGTCTCCTGAAGCAGTCAAGAAGTTAATAGAACAAGGTTTTAAAGTTGTTGTGGAATCAGGTGCAGGTGTAGGAGCAAAGTTTCTTGATGCTGATTATGCTGCCATTGGAGCAGAAGTGAAGACAGTAAAGGATGCATTTGCTTCTGATATTGTTTTCAAGGTACGACCACCTGAGAAAAACCAAGCCTCTGGCATTCATGAAGCTGATCTCATGAAGGAAGGTGGTAAACTTGTCAGTTTCTTGTACCCAGCCCAAAATAAAGACTTGCTTGACATTTTAGCCAAGAGAAAAATCACTGCTTTTAGTGTTGACTGTATCCCACGGATTAGTCGTGCCCAATCTTTTGATGCCTTGAGCTCAATGGCCAACATTGCGGGCTACAAAGCAGTCATAGAAGCTGCCAATGTGTTTGGAAGATTCTTCACAGGACAGATCACTGCTGCTGGAAAAGTACCCCCTGCAAAGATACTTGTATTAGGTGGTGGAGTGGCTGGTCTATCAGCCATTGCTACAGCTAAGAACATGGGAGCAATTGTCCGTGGCTTCGATGTTAGACCAGCTGTAAAGGAACAAGTGCAATCTCTTGGAGCAGAGTTTTCTGGAAAGTGAACTGATGTTAAAGAGTCAGGAGAAGGTGCTGGTGGGTATGCAACTGAGATGTCTGAAGAGTTCAAAAAAGCTCAAGAGTTGTTATTGGCCAAGCAGTGTAAAGAAATTGATATTGTAATCTCAACAGCGCTGATCCCAGGAAAAACCGGCCCAACCCTTATAACTAATGAAATGATGGAATCAATGAAACCTGGGTCAGTGATTGTGGATTTAGCAGCAGAAGAAGCTGGAGGAAACTGTGAGCTCACGAAGGCGGGAGAGCTCTACAATCACAATGGAGTTAATATTATTGGATACACTGATCTACCAAGTCGCCTTCCAACCCAATCAAGTACTCTTTACGCCAATAATCTGACAAAGTACCTCCTATCTATGGGTGGGAAGGGAGAATTTGCAATTGATCTCAATGATGACGTTGTTCGTGGCTCCATTGTGCTTCAAGATGGCAAAATGATGTGGCCCCCTCCACCCATTGAGATGCCAGCTCCTTCCGCACCCAAACAAAAAGGGTTAGTCAAACCACCAGAGCAAACACCTCTAGCAGCTGCTGCTTGGGAATCTGGCCTGACAACAGCTGGTCTAGGCTCACTTCTTGCTCTGGGAGTTGCCTCACCCAATCCTGCTTTTGCTACAATGGTGACTACCTTCTCGCTAGCTGGTGTGATTGGTTACAAAGTCGTGTGGGGCGTGACCCCTGCTCTCCACTCCCCCCTCATGTCTGTCACTAATGCCATATCAGGTATTACAGCAGCAGGGGGGCTGGTGTTGATGGGGGGCGCCTTGCTACCCAACAACACGGCTACTTCACTAGCAGCAGTCGCGACTCTGGTGTCGTCTATCAACATCACTGGTGGATTTATCATCACAAAGAGGATGTTGGATATGTTCAAGAGACCAGGGGACCCTCCAGAGTACACTTATCTATATGCCATACCCGCAGTCGCTGTTCTTGGTGGATATGCCGCTGGTAAGATCGCAGGCTATCCTGATATGGATCAGATGGCTTACTTGGCCTCGTCTCTGTGCTGTGTTGGTGCGCTTGGTGGCCTCTCAACCCAAACATCAGCCAGACAAGGAAATGCTCTCGGTATCATTGGTATAGGGGTGGGCATGGGAGCAACAATGGGAGCCCTTGCACCTTCTCATGATGTGTTGACCCAGATGGCAGCCATGATGGGTGTCGGAGGTACCATAGGCGCTATCATATCAAGCCGCATCGCGGTCAGCGACCTTCCTCAGCTTGTCGCAGCCTTCCACAGTTTTGTGGGTCTTGCTGCTGTTCTAACCGCCATTGCTAAGTACCTTGCTGATGTGGATCTCTTTGCCGATGACCCCGCTGGTAATGTCCATAAAGCAGCGATCTTTCTGGGCACTTTTATTGGCGGTGTGACCTTCACTGGATCCCTTGTGGCGTTTGGAAAGCTCCACGGCTTGCTAGATTCCCGCGCGCTCAGTCTACCAGGGAAAAATCTGCTGAATGTTGGCATGGCGCTGGCCAATGTTGGAGCAATGGGTTGGTTTATGGCTACTGATAGTGCTGCTGTAGGAATACCCATGTTGGGGACCACAGCTGCACTGTCTTCCATTATGGGTGTTCACATGACTGCATCAATCGGTGGTGCTGACATGCCTGTGGTCATAACAGTTCTCAACAGCTACAGTGGCTGGGCTCTCTGTGCCGAGGGTTTCATGTTAAATAACGATTTACTCACCATTGTTGGAGCACTTGTTGGCTTTTCCGGAGGCATCTTGTCCTACATCATGTGCAAAGCTATGAACAGATCTCTGGCCAACGTGCTGTTTGGCGGGTACGGCACTTTATCTACCGGCACAGGAACACGAGAGAAGATAACAGGTAGCCACACAGAAATCAATGCCGACGGTGCTGTAGAAATGCTTACCACCGCTCAAAATGTCATAATCACCCCTGGCTATGGATTGGCCGTAGCTAAAGCTCAATACGCCATTGCTGACATGGTAAAAACCCTTAAGGAAAGAGGACTTAACGTACGATTCGGGATTCACCCCGTTGCGGGACGTATGCCTGGACAACTCAACGTTTTGCTGGCGGAGGCTGGGGTGCCGTATGACATTGTGCTGGAAATGGACGAAATTAACGAGGACTTCTCGGAAACAGACCTCGCTTTAGTGATAGGCGCGAACGACACGGTAAATTCTGCTGCGCAGGACGATCCGAATTCTGTTATCGCTGGCATGCCTGTTTTGGAAGTCTGGAAAGCGAAACAGGTGATCGTAATGAAGCGTACGCTGGGCACTGGGTACGCGGACGTGGATAATCCTGTCTTCTACAAAGAGAACACTTCGATGTTGCTAGGTGATGCCAAGACCATGTGCGATACTCTGCTTAACAAAGTTAGGGAGCACTATGGCAGTTAA

Transcript

rna-XM_068864779.1

AGCCGCTTGTTGATTCACCCTTGAATGTTTTGTTCATTTCCTCGAGAAGATACTTTAGTCGAGGAAGTGATTAGAACGAACAATAAAGGGATCTGCTGGGTGAGCAGATACTGAATGACAATGTTCCTGCGACCTGGCCTCAGTGTAGTAAGACGATTCCATGGACAGTCTTTACTAGGAAGGAAGAGTGTATTGGGTATCTATGGAAGAGTAACCTGTTCACCCAAGTGTTCCGCTTTTAAGgATCCCCATTTCTATCCAAGGCTTTTTGCTGGGACCAACAGATTTTGTGCAAATGATTCCAAAGaaaaaattcCTCCGGAGGCAATAACTGTTATTCCTTATAATGAGCTATCAATCGGAGTTCCAAAGGAAATTCATGAGGGGGAGAGAAGAGTAGCTTTGTCTCCTGAAGCAGTCAAGAAGTTAATAGAACAAGGTTTTAAAGTTGTTGTGGAATCAGGTGCAGGTGTAGGAGCAAAGTTTCTTGATGCTGATTATGCTGCCATTGGAGCAGAAGTGAAGACAGTAAAGGATGCATTTGCTTCTgatattgttttcaaggtACGACCACCTGAGAAAAACCAAGCCTCTGGCATTCATGAAGCTGATCTCATGAAGGAAGGTGGTAAACTTGTCAGTTTCTTGTACCCAGCCCAAAATAAAGACTTGCTTGACATTTTAGCCAAGAGAAAAATCACTGCTTTTAGTGTTGACTGTATCCCACGGATTAGTCGTGCCCAATCTTTTGATGCCTTGAGCTCAATGGCCAACATTGCGGGCTACAAAGCAGTCATAGAAGCTGCCAATGTGTTTGGAAGATTCTTCACAGGACAGATCACTGCTGCTGGAAAAGTACCCCCTGCAAAGATACTTGTATTAGGTGGTGGAGTGGCTGGTCTATCAGCCATTGCTACAGCTAAGAACATGGGAGCAATTGTCCGTGGCTTCGATGTTAGACCAGCTGTAAAGGAACAAGTGCAATCTCTTGGAGCAGAGTTTTCTGGAAAGTGAACTGATGTTAAAGAGTCAGGAGAAGgTGCTGGTGGGTATGCAACTGAGATGTCTGAAGAGTTCAAAAAAGCTCAAGAGTTGTTATTGGCCAAGCAGTGTAAAGAAATTGATATTGTAATCTCAACAGCGCTGATCCCAGGAAAAACCGGCCCAACCCTTATAACTAATGAAATGATGGAATCAATGAAACCTGGGTCAGTGATTGTGGATTTAGCAGCAGAAGAAGCTGGAGGAAACTGTGAGCTCACGAAGGCGGGAGAGCTCTACAATCACAATGGAGTTAATATTATTGGATACACTGATCTACCAAGTCGCCTTCCAACCCAATCAAGTACTCTTTACGCCAATAATCTGACAAAGTACCTCCTATCTATGGGTGGGAAGGGAGAATTTGCAATTGATCTCAATGATGACGTTGTTCGTGGCTCCATTGTGCTTCAAGATGGCAAAATGATGTGGCCCCCTCCACCCATTGAGATGCCAGCTCCTTCCGCACCCAAACAAAAAGGGTTAGTCAAACCACCAGAGCAAACACCTCTAGCAGCTGCTGCTTGGGAATCTGGCCTGACAACAGCTGGTCTAGGCTCACTTCTTGCTCTGGGAGTTGCCTCACCCAATCCTGCTTTTGCTACAATGGTGACTACCTTCTCGCTAGCTGGTGTGATTGGTTACAAAGTCGTGTGGGGCGTGACCCCTGCTCTCCACTCCCCCCTCATGTCTGTCACTAATGCCATATCAGGTATTACAGCAGCAGGGGGGCTGGTGTTGATGGGGGGCGCCTTGCTACCCAACAACACGGCTACTTCACTAGCAGCAGTCGCGACTCTGGTGTCGTCTATCAACATCACTGGTGGATTTATCATCACAAAGAGGATGTTGGATATGTTCAAGAGACCAGgGGACCCTCCAGAGTACACTTATCTATATGCCATACCCGCAGTCGCTGTTCTTGGTGGATATGCCGCTGGTAAGATCGCAGGCTATCCTGATATGGATCAGATGGCTTACTTGGCCTCGTCTCTGTGCTGTGTTGGTGCGCTTGGTGGCCTCTCAACCCAAACATCAGCCAGACAAGGAAATGCTCTCGGTATCATTGGTATAGGGGTGGGCATGGGAGCAACAATGGGAGCCCTTGCACCTTCTCATGATGTGTTGACCCAGATGGCAGCCATGATGGGTGTCGGAGGTACCATAGGCGCTATCATATCAAGCCGCATCGCGGTCAGCGACCTTCCTCAGCTTGTCGCAGCCTTCCACAGTTTTGTGGGTCTTGCTGCTGTTCTAACCGCCATTGCTAAGTACCTTGCTGATGTGGATCTCTTTGCCGATGACCCCGCTGGTAATGTCCATAAAGCAGCGATCTTTCTGGGCACTTTTATTGGCGGTGTGACCTTCACTGGATCCCTTGTGGCGTTTGGAAAGCTCCACGGCTTGCTAGATTCCCGCGCGCTCAGTCTACCAGGGAAAAATCTGCTGAATGTTGGCATGGCGCTGGCCAATGTTGGAGCAATGGGTTGGTTTATGGCTACTGATAGTGCTGCTGTAGGAATACCCATGTTGGGGACCACAGCTGCACTGTCTTCCATTATGGGTGTTCACATGACTGCATCAATCGGTGGTGCTGACATGCCTGTGGTCATAACAGTTCTCAACAGCTACAGTGGCTGGGCTCTCTGTGCCGAGGGTTTCATGTTAAATAACGATTTACTCACCATTGTTGGAGCACTTGTTGGCTTTTCCGGAGGCATCTTGTCCTACATCATGTGCAAAGCTATGAACAGATCTCTGGCCAACGTGCTGTTTGGCGGGTACGGCACTTTATCTACCGGCACAGGAACACGAGAGAAGATAACAGGTAGCCACACAGAAATCAATGCCGACGGTGCTGTAGAAATGCTTACCACCGCTCAAAATGTCATAATCACCCCTGGCTATGGATTGGCCGTAGCTAAAGCTCAATACGCCATTGCTGACATGGTAAAAACCCTTAAGGAAAGAGGACTTAACGTACGATTCGGGATTCACCCCGTTGCGGGACGTATGCCTGGACAACTCAACGTTTTGCTGGCGGAGGCTGGGGTGCCGTATGACATTGTGCTGGAAATGGACGAAATTAACGAGGACTTCTCGGAAACAGACCTCGCTTTAGTGATAGGCGCGAACGACACGGTAAATTCTGCTGCGCAGGACGATCCGAATTCTGTTATCGCTGGCATGCCTGTTTTGGAAGTCTGGAAAGCGAAACAGGTGATCGTAATGAAGCGTACGCTGGGCACTGGGTACGCGGACGTGGATAATCCTGTCTTCTACAAAGAGAACACTTCGATGTTGCTAGGTGATGCCAAGACCATGTGCGATACTCTGCTTAACAAAGTTAGGGAGCACTATGGCAGTTAACTAGTGGTACAATTAGTCTCtgaaaaagaactttttttctcaattcaGCACTATAATTTAGCTCTATTTTTAGTATGAATTTGGAAACCAATAAGCACTTTCAGCACAGCAAGTTGAATAGCGCCTCAAGATATAAGCTTAACAAGGAAAGTAATCGTTCAGTGAAAGCGGCATTCATTTAAGCCGGTATCTTTTCCATCCTCTcagaaaaataacaacaacatcgTGCAATGCCAAATACGATGCCTTTAGAGATTGTTAGCATACGGCGGTGAATGTGTTCGCTTTAACGTGGTTCCCAACAATTTATTTCCTTGATAATTCATCCGAACTGTCCACACAGTAGATTGGTCAGAATAATCGCAAAGTTCTTTCGAGGTGTGGCGCGAGACTTTTTCAAATGAAGCTTTCAAGCAGTCGTTACTTTCTAATGATCTTCTTATTCCAGTTACATGAGTGTGTTTATATGAGGCCTGTCAGTTTCTCTTTTATCCAGGATTCGTAAGTAATGATGGACGCTCAATTTTAATCAACGTTACGAAGTGTCCCGAGAagtctaagggccgatttacacggtgcgattttggcgcatgcgacaagcttatgacaggcctacgacatgttttacgattgtcgcagcgttttaaaacatgttttgacGTGCTACGACATTTTCTCTGACGTACACGACAATCGCAAACGAGTTGTAAGCCTGTCGTAAGcatgtcgcatgcgacaaaaatcgtacacTGTAAATCGGCCTTAAGAGTCCACTTCGTAATTAgcatctttttttccttttttccttatGTTTTCGTCACCGTTGTGTGTGCATCTGGAACTTGAACATGGCTAGAGGAGTAGATTCGGGGATTTCCTTTTGTGATGTTAACAGTGaaaaggacacttcgtgacgctaaAGAATTCAGCGCTCACATAATTACTTGTAATCGCACGGGCTTCTAGTTTCATTCTAATGTGTCCAAACTATCCTGGTGTGCTTTGTGTTGAATCTAACCTCATCCCTAAGTGGGATGCTATTTTAGAGATTGCAGTTGTACAATAAAGAGTGCCCCGTGAAGGATCGTTCACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11024	NAD(P) transhydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=NNT PE=1 SV=3
W5PFI3	NAD(P) transhydrogenase, mitochondrial OS=Ovis aries OX=9940 GN=NNT PE=1 SV=2
Q13423	NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=NNT PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003192 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05222 all species →	AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	Domain	Interproscan
PF01262 all species →	AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	Domain	Interproscan
PF02233 all species →	PNTB	NAD(P) transhydrogenase beta subunit	Family	Interproscan
PF12769 all species →	PNTB_4TM	4TM region of pyridine nucleotide transhydrogenase, mitoch	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007886 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR026255 all species →	Family	NAD(P) transhydrogenase, alpha subunit	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR007698 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Interproscan
IPR034300 all species →	Domain	NADP transhydrogenase beta-like domain	Interproscan
IPR024605 all species →	Domain	NAD(P) transhydrogenase, alpha subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10160 all species →	NAD(P) TRANSHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008746 all species →	Molecular Function	obsolete NAD(P)+ transhydrogenase activity	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006740 all species →	Biological Process	NADPH regeneration	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00323	NNT; proton-translocating NAD(P)+ transhydrogenase	EC:7.1.1.1	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720880.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

103.4Max TPM

45.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	45.00	103.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	103.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	103.06
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	70.33
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	69.76
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	67.24
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	66.63
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	65.89
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	65.40
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	64.67
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	62.80
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	62.69
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	62.28
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	61.59
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	59.29
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	55.99
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	55.94
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	53.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	44.75
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	43.87
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	43.30
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	41.54
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	41.45
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	41.04
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	39.28
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	32.27
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	31.12
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	30.86
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	28.08
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.66
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	25.13
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.