Gene detail

Detailed information of XP_068720884.1 in Montipora capricornis

Genomic Location: chr9:4732560...4744081
NR annotation: XP_029205231.1, short coiled-coil protein B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJK1	Short coiled-coil protein B OS=Danio rerio OX=7955 GN=scocb PE=3 SV=1
A8NJZ7	Short coiled-coil protein homolog OS=Brugia malayi OX=6279 GN=Bm1_04115 PE=3 SV=1
Q08BG7	Short coiled-coil protein A OS=Danio rerio OX=7955 GN=scoca PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10224 all species →	DUF2205	Short coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019357 all species →	Family	Short coiled-coil protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21614 all species →	SHORT COILED COIL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20316	SCOC; short coiled-coil protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720884.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

290.3Max TPM

141.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	141.19	290.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	290.26
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	276.45
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	256.26
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	204.97
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	202.61
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	200.00
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	199.91
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	197.52
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	195.82
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	193.37
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	188.99
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	187.77
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	181.86
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	178.22
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	172.17
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	148.37
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	141.51
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	141.50
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	141.20
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	141.02
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	138.05
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	137.24
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	128.22
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	125.71
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	124.46
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	122.50
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	118.40
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	116.69
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	116.27
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	115.69
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.