Gene detail

Detailed information of XP_068720885.1 in Montipora capricornis

Genomic Location: chr9:43691121...43706077
NR annotation: XP_029188391.2, lysosomal Pro-X carboxypeptidase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068864784.1

AGTCACGAAAGAAAAATACCTGACAATCAAATCAATAATGCACCAAGTACCCTAAGCAAATATTCATTTACTGACAGTTCTAACAAAATTTTACACCAacatttcaaataaataaactcCTTAGAACATCTGTAAGCGGTTTGGAAAGGTATCCGAGGCTTTGCAGAGTCATGTGCGGTGATCACGAGGCCATCACAAGGTTTAAGTATAATGGCTAAAGAGGGGTGTATATAATTTCGTCTGGCAAAGGAAAGCAACTAGATCAGTCAGCAGGTCTCGCTTCGGATGCCTGTTGGGCAAGTCAACCATCATGGCAGCAGTTAAAATCTGTCGGATAGTGATCTTTATACTTGCAGTTTTTTCTGTGGGTGAAGCGTTTCGACTGCGAGCCCGTTTTCCTCGTCCTCAAAGCAAGGATTTTAGGCATCACGCCAAGAGATATGTTTGTCGATACTGCAACTACGACACAAAGACCTTTCGCCAAAAGCTGGACCACTTTAATTTCAAAACCAACCAAACCTTCCTTCAGCGTTACCTCATCACCACGAAAAACTGGGAATACGGTggcccaattttcttttacaCCGGAAATGAAGGAGACATAACTTGGTTTGCCAACAACacgGGCTTCATGTGGGACAGTGCTAAAGAGTTTGGAGCGATGTTAGTCTTTGCTGAGCATCGGTATTATGGGGAATCGCTGCCTTTCGGTAACAAATCCTACGAGAGCCCGACCTATCTAGGATACCTCACCTCCGAGCAAGCACTAGCGGACTTTGCTGTTCTTATTTATCACCTCAAGGAAACCATCCCCGGTGCAAGTAATAGCCCAGTTATAGCAATCGGGGGCTCGTATGGAGgcatgCTGGCTTCATGGTTTCGAATGAAATATCCGAATATGGTCGCAGGGGCTCTCGCTGCTTCGGCGCCGATTCTACAGTTTCCTGGAATTACACCTTGTGAGTCGTTTTACAAGATCGTCACCAAGGACTTTCAAAGAGATGGAGGAGACGCATGCGTAAATTCAGTTAGGAAAACATGGAATGTCGTCAAGACATTTGGAAATACAGGCAGTGGACGCAAGAAGCTTACAGGTATATTTAAGCTATGCTCTCCTCTTAAAACGGAAGATGACGTCACACAACTTGAATACTGGATAAGCGAGACCTGGGTCAACTTAGCGATGGTGGACTATCCGTATCCCGCCAGCTTTTTGGAACCCCTCCCTGCATGGCCTATTAAGGTCGTCTGTAAATATCTACAAAACGACAGTTTAGAGGACGACAAACTTCTTCAGGCTGTTTCGCAAGCGCTTGGCGTGTATTACAACAATTCTGGACAAGCCAAATGCTTCAATACTTCACAGCAAGCCGTGTCTGCCCTTGGAGACGAAGGCTGGTATTTTCAGtcGTGTACAGAGATGGTGATGCCTGTCTGTTCAGACGGAGTCAATGATATGTTTCCTGTGACGAAGTGGGATTTCAAAGTATACTCGCAGGAATGCCAAACAACATTAGGTGTGACTCCATTGCAGCACTGGGCCGAGGCTATGTATGGCGGAAAGAATATAAAAGCTCATAGTAACATTGTGTTCagTAACGGTCTTCTGGACCCATGGTCGGCAGGTGGGGTTACCAAGAACCTAACAGACAGTCTCATTGCCGTGCTGATAGAAGAAGGCGCCCATCACTTGGACCTGAGGCATAAAAATCCTCTGGACCCTTCATCAGTCGTGCAGGCACGAAAGACTGAGAAAATTCTCATCGCAAAATGGATCAAGGAATATAAtaagaacaaaaagagaaaagtgCATTTACGAAATTCccacaagaataacaaaacaaaGTATGCATCGATTGTGTAGCTTGTATCAGCTGACGAAAGCATGCGACCAGCTTTTTAAACGTTAAGAATTTTCGGAGAGTCGCTCGCCAGGAATATTCCATTTCATTGATCAATAGAATTTCACTGGCGTGATAAGCAAAGCAAGCAACCGTGACATCAAATTATTTGCTAACCAAACTTTTTACCGCAAAATAAACCACTTTTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RBU7	Lysosomal Pro-X carboxypeptidase OS=Pongo abelii OX=9601 GN=PRCP PE=2 SV=1
P42785	Lysosomal Pro-X carboxypeptidase OS=Homo sapiens OX=9606 GN=PRCP PE=1 SV=1
Q7TMR0	Lysosomal Pro-X carboxypeptidase OS=Mus musculus OX=10090 GN=Prcp PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01285	PRCP; lysosomal Pro-X carboxypeptidase	EC:3.4.16.2	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068720885.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

149.3Max TPM

80.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	80.86	149.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	149.33
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	139.19
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	138.76
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	137.70
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	137.34
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	135.82
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	135.25
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	134.05
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	132.77
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	131.47
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	122.68
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	119.74
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	118.20
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	118.02
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	116.34
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	115.22
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	113.26
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	108.98
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	81.99
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	78.98
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	74.90
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	60.18
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	59.66
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	58.02
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	51.72
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	50.36
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	47.42
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	15.85
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	14.08
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.53
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.