Gene detail

Detailed information of XP_068721114.1 in Montipora capricornis

Genomic Location: chr10:67907439...67909935
NR annotation: XP_015766920.1, PREDICTED: activating signal cointegrator 1-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068865013.1

TCCTTCAAACATCCGATTGATGAAGACTTGATGAATATGCTGTATTCCAGCGGTAATGAGTACAGGGCATGCCCAGCAGGCCTTGAATGAATTCAAAGATGGCGGCGGCACTCACTGAAGTAAAAGCATGGTGTCTTCAAGAATTGCTAAAGATAACAGATGATGAAGATCAAGTGACGGAAAATATACTGTCGATGAATACTGCAAGCGACTTACAATCATATTTGCAAAGTGTTCTTCAGCCCGAAAGAAGTGAACATCGAGACATCTTGGTGGAATTTACCAAAGTCGTGGAAACCTGTGGACTCGATATTTCGTACTCTCAGAAATGTTCGGGTGAATTTGTGGCTGCAAGCTATCCACCACTCTTGAAAAGCGAAAACAAAGGGATGATGAACTCAGGAAAAGAGCTAAAGAAGAAAACCGCGCGATTTGTACCTCTGTATGGAGATGAAGGTGAAGCTAGAAGCTCTGTGCGCTTACCTGGAAGACATCCTTGTGAATGTCTCGGTCAAAAGCACCAGCTTATCAACAACTGCACAGAATGTGGGCGCATTGTTTGCATGCAAGAAGGTTCTGGACCCTGTTACTTTTGTGGGGCTTTAGTTTGCACCAGAGAGGAGCGTGAAATATTGTCGAGAAATTCCAAAAAGAGTCAGAAACTGTATGAAAAACTTGTGACGCAATCAATAGAAGCAGTTTCAGAGAGCGAGGCAACACTTTCAGTGGCAGATAAAAGCCTGCAAGAGGCCATTGCACATAAGAACAAACTTATTGAGTTTGATAAGAGTGGTGTTCGTCGTACCAAGGTAATCGATGACGAATGTGATTACTTTGCGAGTGACTCCAACAGGTGGCtgtcaaaaaaggaaaaagatgcactgagaaagaaagaagaggaaCTAAGAGAGAAACGCCATGGCTCACGGAGGCAGATGAAAGTAACACTTGACTTTGCAGGCCGAAGAGTCATTGATGAAAACCAACCTTGTGATTATGGCTCTGAGGCAGATGTTGCTGTAGCTTCTGGTATTTACAGCTCAGATATTAATTCTGAATTCATAGTAGTGTCGATTCCTAAGTATCAAAATGTTACCTCCTTAAAATTTGTTCATCCAGGAATCAAATTTAGCAAGCCAGCTTctcatgaaagatcagctgAGAAGAACAGAGAGGTAATGCGTATTCAAGACAAGGAATTCCAGGAAATGTCTGACAATGGCTCATGCTTAAGTATGCATCAGCCATGGGCCTCGTTACTTGTGATGGGAATCAAAAGAGTGGAAGGCCGCACATGGTACACAGCACACCGTGGGCGTATTTGGATTGCATCTACTGCAAAAGAACCAGTGGAAAATGATATCAAAGCAGTTGAAGGGATGTACAGGGCTTTGTATGGTGACAAAGCCATTGCATTTCCAAAACACTACCCCGCATCATGTTTGTTGGGATGTGTTGACATTGTGGATTGCCTTGCCCAGGAAGATTATAGAAATGAGTTCCCTGAAGGGGAATCAGAGTCTCCCTTTGTTTTTATGTGTGAGAATCCGCAGCAGTTAGCAGTAAAGTTTCCTGTGAAAGGACAGCATAAGATTTGGAAACTTGATCAAGCTATCCATAAGGCTGCCAAAGGAGGGCTTAGGAAAGCTGCTTAATGCTTCCtcttacatgtatacatgtataccaaattttattgttttgtttgtcactAAAATCAAACAGTAACTTTAAATTGACATTTTGAGTTTGAAGCAACTGAGGGTTAAATTGCTTAACCTTTCTTACATAAAGATGAATGAAGGCAAGCTTTTAATTGCATCTGCAGTCAATTCACACCACATCAAGCTGAGTTGGTCTGCTCAAAAGGAATTATCCTGACCCAACAATGAAAGCTGACCAACCCTAAACCTTAGTAAATGTGGGATCTTTGACAAGACACAAGGGTGGTTtatgaattacatgtaaatactgCATATTGCAGTGACAAGGAACACAAAGCTGGCAGTaactgtaataattttataaaaatatgTTTGGTCCATAAATCCTCTTTTAAGTCCCCCCTCTCTAATATAATAAGTCCTCCCTTTTCAAAGAAGAAAGCTCTCTTTTAAGCTACCCTCCCCGGTATTCTTTATAACCAAATTAATAAATGATACACTGTATCCCAGGGATTCAGTGTTCAAGACAGGTTCtggccactggttgaatttgtttctggaagtctctggttcaacttctcatctgcacttgtaaatagccaaataGCTTGTGtcccgccagttgggattcttaacagttgttgttgaatgttctgttctgtcatgatAGTGTTCATTGTCCTTGAAAAGTGGTCAattaattatgtatgtatgtatgtatgtatgtatgaattaattaattaatcacgACAGCACACTTATCTGGTATGGTTTATTCACATGCTGGGAGATCGTATTTGGTTCTCcaccgttgaataaaaatgttgcaaataaCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXN3	Activating signal cointegrator 1 OS=Mus musculus OX=10090 GN=Trip4 PE=1 SV=2
Q15650	Activating signal cointegrator 1 OS=Homo sapiens OX=9606 GN=TRIP4 PE=1 SV=4
O13855	RQC trigger complex subunit RQT4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1A6.01c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007434 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06221 all species →	zf-C2HC5	Putative zinc finger motif, C2HC5-type	Domain	Interproscan
PF04266 all species →	ASCH	ASCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039128 all species →	Family	Activating signal cointegrator 1-like	Interproscan
IPR009349 all species →	Domain	TRIP4/RQT4, C2HC5-type zinc finger	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR007374 all species →	Domain	ASCH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12963 all species →	THYROID RECEPTOR INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:0180022 all species →	Cellular Component	RQC-trigger complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23398	TRIP4; activating signal cointegrator 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721114.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

16.3Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	7.57	16.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	16.25
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	16.23
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	14.34
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	14.23
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	13.91
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	13.45
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	12.85
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	12.33
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	11.92
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	10.91
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.25
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.00
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.74
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.48
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	8.85
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.85
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	8.47
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.36
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.94
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.61
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	7.16
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.74
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.37
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.43
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.90
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.