Gene detail

Detailed information of XP_068721206.1 in Montipora capricornis

Genomic Location: chr10:6026274...6035876
NR annotation: XP_029191945.1, protein phosphatase inhibitor 2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068865105.1

GAGGGCATGGGCTGCCTGTGGTCTCAGCGACCAAATACTACTGATCATCATTGCGAGGTGTCAGCGAGAAGTTGACTGGTTTCAGCATCAACATGGAGGAAGATCCTGACCCTCCTAAAAGAGGGATTCTAAGAAACAAATCAGAGGAAAAGCACCATTCAGGTATCCATTGGGATGAAATGAACATTTTGATGACACATCACCCCCCAGACAAAGATTATGGACACATGAAGATCAATGAGCCTCCAACACCATATAGTAAATGGAAAGAGCCAGAAAGTGAGGAAGGAGAAGGAACAGTGGAGCCATTTTCCGATGATGAAGCTGATCCTGGAAAATTGGATGCAGAAAACTTGCATGAAAGAATTAAAGATGCTCCCCAGAGACGCTCatgggaagaagaagaaggaaacGATGAAGAAGATGACGAGCTTTCAGAAGGTCAGCAAGTAAAGGAAAAAGAATTCagtgaaaagagaaagaagCATTACAATGAATACTCCAAAGTTAAACTTGCACGCAAGCTAATAGAGCAAGAGTTAAAAGATATGGAAGATGATGGTGATGCCACAGACAGCAAAGAGGATAACACAGCCTTGTCAGAAGTTCCAGTGGCAGCTGCTGCTGACACAGAGATGGATGAGGTACAATGATGGATAGTTTTTATTGTTGCTTGAATGTGATGGCTGGACGATGTAAATGTTCATGATTGTATGCCTGTGCAGATAAAGCAAATTATATGGCAAGATAGGTCTGCTGATCCTCCAGGAACTGAAAGATGGTGCAAAAAAGGCTACCAAATTTGCCGCTTGAAAGACACTGTGTACAGGGCCGCACATGATCTCCAGTAGGCAAGAATGACTGGACAAttttaactaaataaataagtacAACTTTATTCTTAAGTTGTTGAAATTCTGTTCTACACTTGCTCCATAAATATTTAGTGTcctattttattattgttgagATCCgagcacaaaattaataatcttgGAACAAGATTTAGCATGTGTCAAAATTTCTGACCGGTAGCAATGTTCTTGTTGGTTTTTTCCTGTCAGCTTACAGCTAAATTCCAAGCAATATATGGTGCGAGGGTTTTCAGATAATTGCTGAAGGCAATTTTGGTACAATTTGGTTTCTGGGCCTCAAAAAAATCAGCAGCAATTTTTTTGCTTGGAATTTGAACAGCAGCTCTAGGAAATTTTCAATGATTATGAAATACTGTTCATAACACTTATCTAATCTTCAAGCTTTTGATGTGTTCaagcaaattattattttatgaatgATCTGCTGTTTTTACTTGGTTTTTCTGTGAATACATTTTGGgaactttttaaattttcttacgAGAAGACACTCTATAACGGGTGGAACATTTGGCACATAGATATCatcactttaaaaaaattattaatcaGCTACAcaagagctctgtgataatttgtacAATAAAAAGGCcacttaagggcccactgacgtattttttgaggtgcgttgctaaggatgtaatgattaagtaatttgagagaatttggcattattttggtcagtttccaacttttgtaagccaatgaccctaaatatgacgtcatcataccacgcccatggtcacgtggccaataaaagaaaactctaaattatTTGTCTCTGTGCTACGCAATTTTAGTATTTAAtgatttgtattcgtttttgcatccagccaagtgTGGttgtctttttattttgaaaaatgttctttttaaggacataaacgatactgaaatacccataactttttcaaaaaaagatgattttaaaaaatcaatgcttagctatattctgtatttgggggtgaaacgtgccatgtaaaaaaaaattaattcaatttaaaaccgccagaaatttagcttttttctcaaaccggaagtctgTTTACGcgtgcgcagttgatctgagaacgagaacgagcgcgaggaagggcgaggaaaaaacCTTCGAttgaaacaacagtttgtgcggtgacttttgcttgtgagtgggttttcttgtcagctcatgatatgatgttGTCAGTTACCAGAAgtgacatttcacttccttagcaacgcgcgaaaaatccgtctgtgggcccttaatgGCAAACTGTCTTTAAGATTTTACAAGATGTTTGTGTGCCTCGGTTTAAGAGTTTCAGTCTCTCGCATGAAAATAGGGACTTTATTAAGATCTACTACGGCAATACCGACAGAATGTAACTTTGCATAATCCTAAGTCTTTCATGGTTATTTCATCTCGTTCGCTTTCTACCGTACAGGCAGATTTTATCCTACCATAAAACTGAATTTATACCAGCTGTTTCAGAGTAAAATGtagaatgaaagattcgcatttgtatgctcacgttgtctttaaaacctcaaatttggcgatTTCACATTGTTTTTATGCAGAGTACAGCAGTAAAGTGCATGCCACATGTGCAGCAtgattctttttcctctttttaccAATGATGTTATTGGTTTGTGGCATTGTTATTGCCGTAGtagtttcttaaactccctgttaTCTTTTAAGGGTTCCCTCTCTGCTTGGCAAGCAAATGGACAGAGAGGGCTAAgtgattcctttttttttagtgtgtctttgaaaagaaattaaatctAAAACAAGGAGGGAGGAATTGTTGAGTACAGGATTATGCACCAACGCTTTGTTATGTAGCTCAACAACCAATGTTTCTGATCACTAAATTAACATGTGACAAAAAGCTAATGCCAGGGTTCCACCTTAAAAAAATTTCCTTTAGGGGTCCttggttaaaaattaatttaataaaatacaatacaatgtacTTTCCTGTTCAGACAATAACAAAGATGGTTTgccatattttatttttgtcaataagaattttttttttaaattgtgaaCCAGTTTTAGGATGACGAGAGCAGAAGTTGAGCAAATCTCACAGACTCCTTCAAAAATCTTGTTTTCTCAGCCAAATTGTTTATTTTGTCGGAGAAAATCCTCTAGTGCTAGCCCTGATTCTTACAATTCCATCCAAAACAGTATCCAGAATCTGGCCTTACCTTCAATCCAGTTTGATTCTACCTACACCGtctaaaatactttttttttttttgctccaaATTAAGTTAAATAATGGTTCCTACAAATCTAACTTACAAATGCTGTACTGCAGTTTATTAATTTAATCCAAGGTGACAAAAAAGTGCCAATACTATTGTGTCACCCTAAAAATATAGATAAATTATATGCTTTGATTCCTGTAAATTTGATCTTGCACAAAGAAAAGAACGCTTTCGTAATTTCCTATCCTTGCCGAGACAGGCTTTTGATGAATTATAtgactcttttcttttttccaacTTCAACAAAAGCTTCTACACATTGTTCAATCTCTTCTGTACTATGAGCTGCAGAAATTTGGACACGTATCCTTGCCTTTCCTGCAAATTATTAGAATCATAATTATTGTGAGTAATTAGTAATATTCCGCTGACAAGTTCAAAGCTGTCATGACCAATAAAAGCCATGTTTTGTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11845	Protein phosphatase inhibitor 2 OS=Oryctolagus cuniculus OX=9986 GN=PPP1R2 PE=1 SV=3
P41236	Protein phosphatase inhibitor 2 OS=Homo sapiens OX=9606 GN=PPP1R2 PE=1 SV=2
P50411	Protein phosphatase inhibitor 2 OS=Rattus norvegicus OX=10116 GN=Ppp1r2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007763 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04979 all species →	IPP-2	Protein phosphatase inhibitor 2 (IPP-2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007062 all species →	Family	Protein phosphatase inhibitor 2 (IPP-2)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12398 all species →	PROTEIN PHOSPHATASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004864 all species →	Molecular Function	protein phosphatase inhibitor activity	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0043666 all species →	Biological Process	obsolete regulation of phosphoprotein phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16833	PPP1R2, IPP2; protein phosphatase inhibitor 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721206.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

206.2Max TPM

88.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	88.45	206.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	206.17
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	204.08
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	202.06
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	201.42
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	198.04
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	195.78
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	130.48
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	127.62
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	125.77
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	107.63
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	100.93
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	100.01
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	98.42
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	94.80
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	94.20
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	91.71
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	87.33
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	85.82
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	83.11
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	69.32
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	69.26
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	63.39
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	62.42
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	61.63
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	57.39
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	57.30
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	56.70
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	55.28
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	55.25
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	40.84
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.