Detailed information of XP_068721341.1 in Montipora capricornis

Genomic Location: chr10:70801277...70851800
NR annotation: XP_044169887.1, protein virilizer homolog isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q69YN4Protein virilizer homolog OS=Homo sapiens OX=9606 GN=VIRMA PE=1 SV=2
A2AIV2Protein virilizer homolog OS=Mus musculus OX=10090 GN=Virma PE=1 SV=1
Q291E4Protein virilizer OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=vir PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002807 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for XP_068721341.1 in Montipora capricornis.
 InterPro
InterPro termTypeDescriptionSource
IPR026736
all species →
FamilyProtein virilizerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23185
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0036396
all species →
Cellular ComponentRNA N6-methyladenosine methyltransferase complexInterproscan
GO:0080009
all species →
Biological Processobsolete mRNA methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22910VIRMA; protein virilizer-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721341.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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