Gene detail

Detailed information of XP_068721602.1 in Montipora capricornis

Genomic Location: chr10:41631607...41632455
NR annotation: XP_029191141.2, 6-phosphogluconolactonase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQ60	6-phosphogluconolactonase OS=Mus musculus OX=10090 GN=Pgls PE=1 SV=1
O95336	6-phosphogluconolactonase OS=Homo sapiens OX=9606 GN=PGLS PE=1 SV=2
Q2TBQ8	6-phosphogluconolactonase OS=Bos taurus OX=9913 GN=PGLS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01182 all species →	Glucosamine_iso	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005900 all species →	Domain	6-phosphogluconolactonase, DevB-type	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR039104 all species →	Family	6-Phosphogluconolactonase	Interproscan
IPR006148 all species →	Domain	Glucosamine/galactosamine-6-phosphate isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11054 all species →	6-PHOSPHOGLUCONOLACTONASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan
GO:0017057 all species →	Molecular Function	6-phosphogluconolactonase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01057	PGLS, pgl, devB; 6-phosphogluconolactonase	EC:3.1.1.31	Pentose phosphate pathway	ko00030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721602.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

141.2Max TPM

66.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	66.72	141.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	141.24
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	139.34
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	134.58
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	107.80
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	106.78
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	100.87
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	97.39
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	96.19
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	92.80
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	92.61
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	86.83
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	85.20
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	84.97
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	82.00
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	81.81
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	81.10
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	73.47
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	69.65
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	66.95
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	63.53
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	61.80
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	60.30
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	58.12
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	58.10
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	54.40
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	50.72
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	47.24
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	46.22
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	40.12
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	39.68
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.