Gene detail

Detailed information of XP_068721671.1 in Montipora capricornis

Genomic Location: chr10:57832154...57866734
NR annotation: XP_044175149.1, mdm2-binding protein-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138018898

ATGTTTTTTTTTACTCCCGGCTTCTTTATGGAGAGATATTTTGTGTTCCTTGTGATACACGACGATTTCGCAAAAGAAGAAGATTGTAAATGCCATACGGACGTGATTCCAGTGCTGCAGAGCTTATTGGAAAATATTTCTGAGCGTTGCATCAAAGATAAACTTGCTTATGGAGGTCTTGAGAACAGTCAATATGTAAGATTTGATCCTCTTTTGGCACTGAAAGATGTTATGCCTAAAATTTACTTCAGCCTGGTGGCAGACAGGATTGACCATCTAACTGAGTCTTACTTGCAGTGGAGTGAAGGAGAACATCTAGAGGAATTATCAATAATACTGGAAAAGCAAGATGATAACAACCAAAACAAAATGGCTGATGAAACATGCTCAGACAAGGATTCTGAAATTTCTGAAAAGCTTCACCAACTTGCAGATGATTTACCTCACCATGCTGGTGTTCCTCTTGAAATCTTTTGGTTCTTGTGTGGGAAAGATACCATGTCAATCAGGTCTCACCTGAATCTTTATGGAGCATTAAAGAGGTTCCAGCAGTGGCACAATGCAAGCATTACTGTTATTTGTGGAAGTGACTATGACAGAAATTCATTTTTGAAAACCTGGCAGATGAGTTTGCATTTATCTGTGATACAGCTCAATGGAAAAGAGGCAATTCGAGAAGTATTCAATCCATCAGTTGTATGGCATGGCTCTCTGATCTTTAATGAGGATCAGTCCAAAATCACATTACCTGGTTTTAAATTATGCAACAGAAGAGGCCAGGAAAATATTAAACCTAATTTTAAAAGAATTTTAAATAACTCCATTGTGATTGACAATGTCGATCTCTGCATCGGACCAGAGATAATTATCTTTTGTAAAGTTGAGAAGAGTACAGTTCCATTTCACTTGTTTGTTCCTGTTAAACTAGGGCTAAGCATAGCCTGCCCTTCATTAAAGTGTTCAGCTAGACTTGTTCAATGGCTTTCCTTAGAAAATAAGAAGAATATTGCATTGATAGGAAGTGTTAAGCTTACTGTATCCTCTGCAAAGATCTCGAAAGAAAAGAACACAGAAGCATGGTATAAGTTCGTCCAAGGTCAAAGTTGTTCAGGGATTTCAGATGCTAAAACTGATGATGACGTTGATTATGACAGAAGGATTTGTCTGATATGCAGTGAAAGTGATGAAAAGCTGGCTTTGTTTTTCTTGAGAGCACCAGAGCATTTAAATGGCAAATTATATCATGATTTGACCATGATACTTTCATCTTTTCTGATTTCACAGGATCAGGAAGTGGGAGGACCTTTAAAATTCCCAGATCTAACAGACAGCTTTTTAGAAACACAAAAGAATTTAACTGAAGTTCTCCTCTGCAAATTGCAGCAAGAACTTGGTGGCCAAACGGATAATCCCTGTCAAGTCCATCCTCCAGATATCTTAAACCAGTTGGCAGAAGCGAAGTGGAAACTTTTACAAGAGGAAAGGAAACAGTTGCTACAAGAGGGAAAAGAAATAGAACTTGAGGTTGTGAGAAGAGAGACTTTACTTCATAGCAAACCAGTGCCGATGTCTCCGAGCAAGTGGCCAGAGAGAATTTGGTTAATGAAAAACGACCCTGATTCAAAAGTCAATAAAGTAGCTGGAAGCAACGAAACAAAATATTCATCAGAAGTATCCACATTAAGTGTCCAAGATATATTGGATAAATTTCGATTAAATGGGATGCCTGTGACACGCAACCTTTGTCCTTTGGGGCTTCTTGAGGGTGGTTTGGTTGATAAACATGTTCAGGTGAACAATGCCAAAAGCGTTGAAGACATAAAAGGAGAGGACTACCCAGAAGCTCTTTCGGCATCGTATCACGGCATTGAGTACTGTCTGGATGATCGTAGATCGTTGGCAAAAGATTCACAGCTCTCATTGCTGCAGTCTTCACATGTTAAACTGGAGACATTTTCTTCATACGTATCAAGAGACAAGCAAGCGGAAAGAAGACTTTACACGCGCTCTTTGAACAAAGGAACGAAAAATATTAACCAGAAACACAATCTGATGAAGCTTACGGTTCCACTGAATAGAACAAAATTGATGGCAACAACGACTGTTAAGACTGCACTTGCAAGAAGGCCGCTTGTCAAGAGGAAATCCCCGTTAAAACAAAACCTACCTGTTCCAGTGAAACGAAAAAGAGAAGAATCAGTTGAAGAGACTAAACATGGTGGGGCAAAGGAGGATACGAAAAAAGAAACACGATCTGAGAGACACAAGAGGCGCTTGCGTCAAGTTGTCCAGAAAACACTCAAAGACAATGGTATCGACTCAAATCATACTTTTTACCAAGCATGCACAGACAGGTTGTACTTGCTGTGCAAGAGTTTTCTCAAGGATCTTCGTTCCTCTCATGGACTAAACGACGAGATGAAGAGACTGGCGAAAAGTAACGTTCATCAGGTGATCGAGTTCGAGACGAAGAGAACATCAGCGTCGGAGAAGACTTAA

Transcript

rna-XM_068865570.1

ATATTGTAAGTGAGTAAAGAAAGCATTGGAGAGATTGTATAGCTACAATATAAGGTGTCATATATGATGTACCTGGATGAGACCCGCGAAATTCATCGTCGCCTCGCGCCTCGGTACATTCCATCAAACCCTTGGTTCAAAttaattgatgtttttttttactcccgGCTTCTTTATGGAGAGATATTTTGTGTTCCTTGTGATACACGACGATTTCGCAAAAGAAGAAGATTGTAAATGCCATACGGACGTGATTCCAGTGCTGCAGAGCTtattggaaaatatttctgaGCGTTGCATCAAAGATAAACTTGCTTATGGAGGTCTTGAGAACAGTCAATATGTAAGATTTGATCCTCTTTTGGCACTGAAAGATGTTATGCCTAAAATTTACTTCAGCCTGGTGGCAGACAGGATTGACCATCTAACTGAGTCTTACTTGCAGTGGAGTGAAGGAGAACATCTAGAGGAATTATCAATAATACTGGAAAAGCAAGATGATaacaaccaaaacaaaatggctgatgAAACATGCTCAGACAAGGATTCTGAAATTTCTGAAAAGCTTCACCAACTTGCAGATGATTTACCTCACCATGCTGGTGTTCCTCTTGAAATCTTTTGGTTCTTGTGTGGGAAAGATACCATGTCAATCAGGTCTCACCTGAATCTTTATGGAGCATTAAAGAGGTTCCAGCAGTGGCACAATGCAAGCATTACTGTTATTTGTGGAAGTGACTATGACAGaaattcatttttgaaaacCTGGCAGATGAGTTTGCATTTATCTGTGATACAGCTCAATGGAAAAGAGGCAATTCGAGAAGTATTCAATCCATCAGTTGTATGGCATGGCTCTCTGATCTTTAATGAGgatcAGTCCAAAATCACATTACCTGGTTTTAAATTATGCAACAGAAGAGGCCAGGAAAATATTAAACCTAATTTTAAAAGAATTTTAAATAACTCCATTGTGATTGACAATGTCGATCTCTGCATCGGACCAGAGATAATTATCTTTTGTAAAGTTGAGAAGAGTACAGTTCCATTTCACTTGTTTGTTCCTGTTAAACTAGGGCTAAGCATAGCCTGCCCTTCATTAAAGTGTTCAGCTAGACTTGTTCAATGGCTTTCCTTAGAAAATAAGAAGAATATTGCATTGATAGGAAGTGTTAAGCTTACTGTATCCTCTGCAAAGATCTCGAAAGAAAAGAACACAGAAGCATGGTATAAGTTCGTCCAAGGTCAAAGTTGTTCAGGGATTTCAGATGCTAAAACTGATGATGACGTTGATTATGACAGAAGGATTTGTCTGATATGCAGTGAAAGTGATGAAAAGCtggctttgtttttcttgagAGCACCAGAGCATTTAAATGGCAAATTATATCATGATTTGACCATGATACTTTCATCTTTTCTGATTTCACAGGATCAGGAAGTGGGAGGACCTTTAAAATTCCCAGATCTAACAGACAGCTTTTTAGAAACACAAAAGAATTTAACTGAAGTTCTCCTCTGCAAATTGCAGCAAGAACTTGGTGGCCAAACGGATAATCCCTGTCAAGTCCATCCTCCAGATATCTTAAACCAGTTGGCAGAAGCGAAGTGGAAACTTTTACAAGAGGAAAGGAAACAGTTGCTACAAGAGGGAAAAGAAATAGAACTTGAGGTTGTGAGAAGAGAGACTTTACTTCATAGCAAACCAGTGCCGATGTCTCCGAGCAAGTGGCCAGAGAGAATTTGGTTAATGAAAAACGACCCTGATTCAAAAGTCAATAAAGTAGCTGGAAGCAACGAAACAAAATATTCATCAGaagTATCCACATTAAGTGTCCAAGATATATTGGATAAATTTCGATTAAATGGGATGCCTGTGACACGCAACCTTTGTCCTTTGGGGCTTCTTGAGGGTGGTTTGGTTGATAAACATGTTCAGGTGAACAATGCCAAAAGCGTTGAAGACATAAAAGGAGAGGACTACCCAGAAGCTCTTTCGGCATCGTATCACGGCATTGAGTACTGTCTGGATGATCGTAGATCGTTGGCAAAAGATTCACAGCTCTCATTGCTGCAGTCTTCACATGTTAAACTGGAGACATTTTCTTCATACGTATCAAGAGACAAGCAAGCGGAAAGAAGACTTTACACGCGCTCTTTGAACAAAGGAACGAAAAATATTAACCAGAAACACAATCTGATGAAGCTTACGGTTCCACTGAATAGAACAAAATTGATGGCAACAACGACTGTTAAGACTGCACTTGCAAGAAGGCCGCTTGTCAAGAGGAAATCCCCGTTAAAACAAAACCTACCTGTTCCAGTGAAACGAAAAAGAGAAGAATCAGTTGAAGAGACTAAACATGGTGGGGCAAAGGAGGATACGAAAAAAGAAACACGATCTGAGAGACACAAGAGGcgcTTGCGTCAAGTTGTCCAGAAAACACTCAAAGACAATGGTATCGACTCAAATCATACTTTTTACCAAGCATGCACAGACAGGTTGTACTTGCTGTGCAAGAGTTTTCTCAAGGATCTTCGTTCCTCTCATGGACTAAACGACGAGATGAAGAGACTGGCGAAAAGTAACGTTCATCAGGTGATCGAGTTCGAGACGAAGAGAACATCAGCGTCGGAGAAGACTTAACTAATTTATTGAACAATTCCAAATTGTACATCTCACACCATaagacaaaaatatatttatatttccGTAGAATAATACGCTTAATAACTGCAATAGGGCAAATTTATCGTTGCAAATACCCCATAGCTATCTCCGAGAAAAAGCCGTAATCcaattaaaatatttacttCTCCCCGTTGTCGACCGGAGTTGcaatgattttgttttcactgTACCAGTCGATGCTGAATTTGAACACCTGGTAGTGCAGCATGTAATGCTTATCAAGTCTTCCTCGAGGCAATGTAATTATTGCATTGCCGTTCGTAAGCGCCTGCGATCATTTACTTATGGATCATGCGCTACATAAGTacttaatttattattattattagccaAAGAAGGCTGGTGATACCAGGCCGCGCCCTATGATTCTCACGATTTCAAAACAGGAAGAGATACTATTTTGTAGCTAACGTTCTCTTTTATGTTGGAAAGCATTTTGTGTGATGATTCAACCCCTATGGACCATAAATAACTAGGCGCTAGTCCTTATCGAGAACCGTTTTCCATGTCAAATCTTGTATAATTTGATCCCAAATTCTATAGCCTCGACAAGgatcctttttgttttttcacctCACAAAACAAGTGATTAAAAACTAATGAAAGCAAAGCGAATCCCCAACAAAAAAAGTTCTTTACAGTGCAATAGCTTCGCTTCGCTTGCCAATAAGGGGAAACGAGACATAGTTAAGTTAGGGCGCTGGATAACATGTTTAGCTTGGATTCTCTTTAGCCCGGAGTGGCCTTATTTTCAACTCCACGATGCAATGTAGAATTCTGCACGTCTGCTAGAATTGTTTCAAAACCCCTGGCCGTGCCATAATTCCATAATATTTAACGCTCCGCATGCACTTTAGCCTTCTGGCCTTACTCCCTAGCTGACGTAACAGTTTGATGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DY7	Mdm2-binding protein OS=Homo sapiens OX=9606 GN=MTBP PE=1 SV=1
Q6NRW0	Mdm2-binding protein OS=Xenopus laevis OX=8355 GN=mtbp PE=2 SV=1
Q0P4G8	Mdm2-binding protein OS=Xenopus tropicalis OX=8364 GN=mtbp PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003774 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14920 all species →	MTBP_C	MDM2-binding	Family	Interproscan
PF14918 all species →	MTBP_N	MDM2-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029418 all species →	Domain	MDN2-binding protein, C-terminal domain	Interproscan
IPR039061 all species →	Family	MDN2-binding protein	Interproscan
IPR029421 all species →	Domain	MDM2-binding protein, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14382 all species →	MDM2-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0007089 all species →	Biological Process	traversing start control point of mitotic cell cycle	Interproscan
GO:0031396 all species →	Biological Process	regulation of protein ubiquitination	Interproscan
GO:0034501 all species →	Biological Process	protein localization to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26116	MTBP; Mdm2-binding protein	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721671.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

4,641.2Max TPM

135.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	135.06	4,641.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	4,641.19
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	38.24
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	23.01
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.65
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.28
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.26
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.24
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	8.85
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.38
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	8.01
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	7.97
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	7.63
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	7.40
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.33
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	7.31
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.19
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	6.80
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	6.22
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	5.59
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.75
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.98
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	3.82
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.42
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.14
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.98
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.85
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.53
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.29
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.94
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.86
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.