Gene detail

Detailed information of XP_068721697.1 in Montipora capricornis

Genomic Location: chr10:51887595...51901270
NR annotation: XP_044175904.1, LOW QUALITY PROTEIN: adenosylhomocysteinase B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51893	Adenosylhomocysteinase A OS=Xenopus laevis OX=8355 GN=ahcy-a PE=2 SV=1
O93477	Adenosylhomocysteinase B OS=Xenopus laevis OX=8355 GN=ahcy-b PE=2 SV=1
Q27580	Adenosylhomocysteinase OS=Drosophila melanogaster OX=7227 GN=Ahcy PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan
PF00670 all species →	AdoHcyase_NAD	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR015878 all species →	Domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Interproscan
IPR020082 all species →	Conserved_site	S-adenosyl-L-homocysteine hydrolase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004013 all species →	Molecular Function	adenosylhomocysteinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01251	AHCY, ahcY; adenosylhomocysteinase	EC:3.13.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721697.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

1,098.0Max TPM

588.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	588.77	1,098.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	1,098.00
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	1,071.93
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1,025.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	1,007.65
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	1,005.16
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	930.00
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	929.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	886.62
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	850.69
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	773.33
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	758.20
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	748.47
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	706.97
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	701.47
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	687.88
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	647.13
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	645.23
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	633.34
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	532.02
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	531.43
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	526.75
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	526.62
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	519.51
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	514.60
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	513.97
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	504.63
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	502.18
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	500.79
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	495.49
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	421.51
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.