Gene detail

Detailed information of XP_068721797.1 in Montipora capricornis

Genomic Location: chr10:38508346...38527436
NR annotation: KAJ7365036.1, hypothetical protein OS493_007677 [Desmophyllum pertusum]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068865696.1

ACCTTACATGACGTATTTGTTCAACTGAAGGATGGAGGTCGATGTTGTGTTGTAAACGTTTGTGAGAGGTTTTTAGCAGTTTCATCGTTGAAGTATCTGGATATTTGTCGTAAAGCGAAGGTGAAGGATTCATATATTGCTTTCATGTGATTTAAGTCTAATTTGTGCAGATTACGCGTCCGAGATCACTCTGCGAACAACATGGCGATGGGAAAGCAAACTCCGCAATATGCTTACAAAAGGAAGGTGTACATTGGGAAGATGAAAAGCCAGGGAAACCAAACTCAAGGAATAATGGCGCAAATGATGTACTACTTGTCTGAAGCACGGCTGCGTGGTAAGATCAGGAGAATAACAGATGCTCTGGAAGCAGACCCAGTTGACGTGCAAACTCTGAAAGGACTGGCTATATCTCCTGATGGCCTCATCACCATTGACTTGCGATGCAAAGTGTGGACTAAGCTACTGAATGTCAATGCATTTGAGTTGTCAAAAAATTGTGGTGCTAGAAAGAAAGaCAAAACATCTGAAATGAAGCAGTTTCATTGTCACAAATACTGGAGGCAAGTTAACTTGGATGTTGATAGATCACATAGACGATTTCCAGCAGAAATGCGAGCATCGAGGCGGCGTTCACTTCAAGAACAGCTAGTCCGTGTCATCATGAGAGTTTTACAAAGAAATCAGGACCTTCACTACTATCAGGGCTACCATGATGTAGCAGTAACGCTGTTGCTAGTTGTTGGAGAGGACTTGGCTACAGCTCTTCTTGAGCAAATGTCTCTTCACCAGCTCAGGGATTTCATGGAAGGCACTATGGACAAGACCAACAAAATGCTGGCATTTTTGCATCCAATAATTAGTGAAGCCGATCCAGAGTTAGAGGATTTCCTAGTCAGATCTGAAGTGGGTCAAGTATTTGCTTTGAGCTGGCTCATCACGTGGTATGGTCACGTGCTCAAGGATTTTACCTCCATTGTTCGACTGTATGACTTTTTCCTGGCCACCAATCCTCTCATGCCTGTGTATTTTGGTGCAGCGCTTATCATTCGTCGCCGTGGTGAAGTTTTGAGTGGTGAATGTGAAATGAGCTATGTACATCACCTCCTCTCTCGTGTCCCCGAGGATCTGCCTGATTACATCGACGAACTTGTCACTGAAGCTCATGCGCTATTTCGTAAATTTCCACCTGAAAAACTTGTCGGGGCTGTGGAGCGCTATCTTAAAGAAAGCACGGCAATTGCCAAACACGATCAGTTTCTTAGAGAGTCAGAGGACCAGAGACCTGACTCTGTTTTACGGCAACGAAGAAAACAACTCTTATCTTACGCAAACAATGAAGTTTTTCCGGATTTTCAGACGCCCGCTCAAGACAACAGCTACACGAAGCTCGCCGTATGGACGTTAACTGCTTCTGTGGGAACTCTAGCGCTTTATGTGTTGAGCACTGCCAAACGATGGATTTAATGCGGTAATCGCTACCTGCCTGTTGTTTGAGTCAGTCGGGAAAGACGTCTGCGAGATATTCAGCTTTGTCTCGTAATCCTATCCAGGTggtctggtgacgtaatttgaagaACTGGGAAGaacaattttaacgccgtatcccacaaccgcgcgcgggcttaggtgttgtttcaactccctgcagtattgccatcgccaaaactcaacagatcattacgtgtctaccacattttctgttactgaatgaacattcaagtggaCCCGACAAGTTCTAACCTCGCTTCTGCCaagttgaattcgaaaataaggcggcgcgcggttgtgggatacggtgtataatttttctccccagtcctccgaaatacgtcaccagatcacctggatacaGTAGCCCGTGGGACAACTGTCCCACTGGCTTTTTAATTGCATCTCATGACGTAACTTTATTTTCCCGTCATGATTTAGGGGGTGCACTTTCTTCCCACTTGGTTGTTAATGTCATCGTTTTCGTTGGCATTATCGTTATGATATATTGTCGGTTcagtttttatgttttttgttgttgcattCTATGTGTATTTGAATCAGATTATGGAATTTATCATAGTTagcaaaatgaaataaattattatactATCGCTTCCCTTGGCAAAAACATCAAATACCCTTAATTGCTGCTGAAATATTACGTTACAAAGCATTTATAGTATAGATTTTTAGATAGCTCCTAAGCTCGtaataaaataatggaaaacAAAATTAGGGGAATCACAGGAACCTGACTCTGGTCCATTTTATTTGCGATCGAATATGTTgcataataaataagaaaagttTATTTCTCAACGTTTAAGCCTAACCGTTCATTCGTTAGCTAAGGATATGTGAATAACTATTATTTCTATTCATAAGTAAAAAGATGCTTTCGAGTCCTCAAGTCCTGCAGACGTGAGGAATTGTTTACAAATTACCCCAGCATAGCCTATCACAAAATGGCGTGGCTTACTATTAAGAAACACTGATTACATTTTCTTTCTCACGGCAACATGATGATTTTCCtttaattagggagcttacgaaacgacgacgccgatgGCAACGATGACGCTACAAagcaataggtttagtgagcaaaaacgatggctctgcacgtgcgttttacattttggtacatttctttgccgtcatctcctaaatgacgacgtgaaatgaccaaattcaaggttctgtggaggacgttagcacatgacgatgagtTTTCAGTTCtgtctctacgcttccaacccgctcataccagtttaattactcaccagttactacacatttttaacgcgaaacgacatgaaatagtttcgcagtgatataaataacgcgaactcgtatttttaaatgaagtccgcGTAGCCgccgtcgtcctcgtttcgtaagctccccaTTAAGTGAACTAGGTCCTCGATTAGACTATCTATTTTCAGGTGGAAGCTATAACGCTTTAGTGATGTATTAAAAGAAGGTTGTTTTTGCTCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96BZ9	TBC1 domain family member 20 OS=Homo sapiens OX=9606 GN=TBC1D20 PE=1 SV=1
Q9D9I4	TBC1 domain family member 20 OS=Mus musculus OX=10090 GN=Tbc1d20 PE=1 SV=1
Q2T9Q1	TBC1 domain family member 20 OS=Bos taurus OX=9913 GN=TBC1D20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006353 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR045913 all species →	Family	GTPase-activating protein TBC20/Gyp8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20913 all species →	TBC1 DOMAIN FAMILY MEMBER 20/GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20372	TBC1D20, GYP8; TBC1 domain family member 20	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721797.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

111.8Max TPM

44.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	44.20	111.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	111.81
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	76.86
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	75.04
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	74.21
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	67.50
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	66.90
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	54.16
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	53.62
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	53.14
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	52.60
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	52.60
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	51.90
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	50.58
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	50.53
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	49.84
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	49.46
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	49.35
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	49.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	48.71
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	48.12
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	47.17
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	45.33
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	45.02
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	40.91
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	40.31
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	39.96
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	37.94
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	37.84
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	36.29
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	34.35
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.