Gene detail

Detailed information of XP_068721879.1 in Montipora capricornis

Genomic Location: chr10:297231...307524
NR annotation: XP_015771105.1, PREDICTED: bleomycin hydrolase-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138019106

Transcript

rna-XM_068865778.1

ATGACAACTAAAGTTCTTCAAGATAAAATCAGAAAATCAACCGTGGATTTTAAACGCAGAAGATCTCAACTTAACTCTCAAAAGTGTTCACAGACAGCCAGGAAAGAAGCCCGAGAGGGCAAAACTTATGAAACAGGTATTGGCCTAAATGTTGAGTTGACATCTATCGTATCCTCTCCTATTACCGATTGTCAAGCACGTGTAATGGCAATGCCACATAACCAGTTTAAAGAAATTGAAGACTTTGCCCCAAAGATTACCTTGAGGCCTGTTGCAAAAGAAGTGAAATACGAAAATAGCATTTTCTATAACTTCTTAATTTTTGACACCGAAACAAATGCAACAGGTAAATCTGCGGAAATCTGCCAATTATCAGTAACTGACAAATCTGCTTCACACAAGTTCTCAGCCTACATCATGCCCACACGGGACATCGATTTGCATGCCTCAAAAGTtaataaactaaaaaaagttacgatcaacgGAGAGCGTAAAATGTACAAGGATGACAAAGTTGTAAGAGCTATACCCTTTAATAGTGCGATTGCTCAATTTAAGAGCTATCTCTCACAGTCCATAACCATAGCCAAGAACAGCACAAACAAACAAGTACGCACGGTTCTCATTGGACACAATGCCTTCACGTTCGACACTCCAATTCTTTTAAGAAATGCTGGAAATGAATTCTCTTCTGAGCTGCAATCTATGGATGTCTGGTTTGCTGATTCTCTCTCTCTGTTCAAAAAACTCATTAAAAGTCAACTTCCTGCTTTACGGAACGCCGATGGCACATTTCCGAAGACTAATCAGTCCTCTCTCTACGAGACCTTGTTCAATCAAACTTTCGACGCACACGATGCCTTGGAAGATGTTCTTGCCCTAAGAAAGATTCTCTTTTCCTCAAAACTGGAATTGCCTAATAAAACCATCGTCGAAAACTCTGCACTCACCGACACAAATCACGCATTCAAGGACTTGGAGTATCTCGATGGTCGCCACAAAATATTGCAATCCTTCCGAGGAAAGCTGTACAATCCAGAAAGAAACGATGGTGCCATAACGAAAAGCATTGCAGAAAAAATTGCCGCCAACCATAGGCATTTCAACCTTGAAGACTTTGAGTTTAGCCAACAGTATCTGTACTTCTGGGACAGAATTGAAAGAGCTTACTTTTTCATTGATGTGTATGAGAAACTGGCAAGAAAAGGCGAAGATCCTGATGGACGTTTGATGATGTTTCTTTTGTCCAACCCACTTAATGATGGTGGCCAGTGGGATATGCTCATTAACTTGGTGGAGAAATATGGATTGGTTCCAAAGGAAGTTTGGCCAGAAGCATTTACCGCTGGGCGCTCAATGCGACTGCGGAAAATTATGAACTACAAGCTGCGAGAATATGCAGTGAAGCTTAAAGAACTGGTTGATAAGAAAAATAGTGAAGCAGACATTAAAGAAGCGAAAGCAAAGATGATGAATGAGGTTTACAGAATTACCAGCATATGTCTTGGTAGTCCACCCCAGTCATTTGATTGGGaatattttgacaaaagcaaAGCATATTGCAAGCTCTCGGCAGTGACTCCACTCCAGTTCTACAATCAGCATGTCAAGCCTGTTTATAACCCACTAGACAAGGTCTGCCTGGTGAATGACCCTCGAAATCCTTACAACAAGCTGCTTACTGTGGAGTACCTTAGTAACATGGTGAATGGACGCCGAGTCTTGTATAACAACCAGTCTGTTGAAGTACTAAAAAAGCTTTCCGCTGCATCTCTCAGAGACAATGAGGCAGTTTGGTTTGGATGTGATGTAGGCAAACATTTTGAAAGGAAAATTGGAGCTTTACATCTAAACATTCATAACTATGAGTTAGCATTTGGGATCTCAATGCTTAACTTGGACAAAGCACAGCGCTTGTTGTATGGAGATTCATTGATGACGCATGCAATGGTCTTCACTGGGGTCTCCTGGGAGGGAAACATGGATTCAAAACAAGAAGGTGACAAAGACTCTTTGGAACTGAAGACAACAAAATGGCGAGTGGAGAATTCCTGGGGCGAGGAGAAAGACAAACCAGGATATTTAATGATGACGGATGAGTGGTTCACTGAGTTTGTCTACGAGGTTGTTGTGGACAAAAAATATGTTCCAGCTGATGTAATGACGGTGTTGGAGGAAGAGCCAATAGTGCTACCGGCATGGGACCCCATGGGCTCTCTTGCCTGCGCCTCTTGTAATCAAGGGGACCATCAATGTCATTTGTGATTTTAATAGTAATTCTTCACCTCGAACTCAGGCTCCCTCTCAGGGCCAAGTTAGGAAAGAAAGAGCGCCTGAGTTCGAGGTTGGAGTCAAACTAGTTTTAACTGTCGTCATATACACGAAAAATTACTCTGCTCTGATCGACTAAAAAAGAGTGCAGCTCTCATGTAAAGCCCCGTGCGAaaggacgcaacattgttgacCAAGAACTGCCAACATTGCAgggtgttacatgttgcgtccgtttgcacaccCACCGTGATCCATAACGTTGCGTGAAGTTTGAAACTGCTCAAACTTTTGAGTCAACTATTCcacacatttctttttttccctgatCACCGAAgcgtagcgcaacaatgttgaaTCCGTTTACACAGCTCTTTCATCATTGTTGGGGTCACGCACGCGCATGAtatatggtctccatggagatatCAACGCATTAACCTTTTgaacaatctcgtccccagcgcCCACGTGtgttttggtcagcgccaagacacgGTGCTATGGAATAATTAATTTTCAGAACTGATAAGCTTATTGTTTATCAAACTGCTCAAGCGTAATCTACTGAGTGTAAAAATAGCTTTTAATTTACGAATATGCCACAAAAATCTCCAACGAAACTTGTAAACACGAAGATTTGCCGCTGCTGTTGTAAACCGTTGAGTTTTAATCATCGCCCCATTTCACTTTTTGGTGAATTCGGAACTCCCAAAATCTTGGAGTTCCGGAAAtagattattccagagctccatgtcttggcgctgaccaaaagacacgtgggctctggggacgagatatccttttgaaatcaagatggtagcCGAATTTTGTAACTTTACGATGTCTTATGAGTCGTATCATTTCCATAATACACGCTACACGTGCTTACATTGTTGCATCTATTTGCACGGAGCTTAACAAGGGTGGAGATGACTTTTTGATCTACAGAGATctgtttcaaccaatcagttgaaTGAGTTTCATAAACAATTGAAGGGCTTGCTGGtactttttcatttgttttgcttttctatCTTTATACCTTTttttatgtatattattagcCCTGCGGGCTCGTGCAAATTTGCTAGTCTGAGAAATGTACTCGTGCTTATTTCTACCAAACTCGAAATCATGTCATCAACTATACTAATTTCGCATTTGCTTCTGTCTTATTCTCCAAAGAATTGGTTATCAAGAGTCACTCAGcaacagaaaatgtttttaaaggCGTCAACATCGATCATAGACAGTATTCATAATTGGTGGCCAAGAAACTATTAAAAGCTAaccgtaaacttttgtttaggcctaattaggcctaaggttagcttttatgcatgtttaggatactttttgtattcgtatccttacccttaccccaacccttggtcttaccctttcCCTCGTTTGAGAAACGCCAATTTTGTGCGTGTCCCAGTTAGTCCAACAAGCATCGTTCTAAAGcaacttttgtattttgtcaatTCCTATCAAGGCTAGTTGGTCTAGAATATTAGAACAAGGACAATAGAATAATGTATTGACCACCAtctatgaatatggtctatgaTATGTAACCGAAACATGAAAAAGTTGCCAAAGAAGAGAGTTCAGTTTCTAGGGCATGCGCTCAGTAGCCGCCTTTATGTTAAGGAGGTTCAAAACAGTTTCTCAAGATCTACTTCACTCTACCAATGAAATGAGTGCAGAATTTGGCTTACCATGTAAACAGATTCTTAAAATCTTGTTTTCCCAAGCGAAGCAAGCTCGAGGAACTTAAGGAAACTCGTTAGAATTTTAGCCACAAGTACCTTTTGATACGACGACTTTAATTAATGTTTCGGTGTATGTTGTCTGTGCTTTTACTTGGGTCGCTTATGAAGATTTCTTTCAGCCTCGTTTTGAAAGCGACGCCAATTCAGAGTCTGACGTCAGACGCACGGCGACATGGTATCAGTTTGTTAAACATTAGGGATAGACTGTTGGTAATAATGCACTTTTATTGACAATTAGACGGTCTTGAAGGCCTCAAAATGTAAACACAAAAATGTGCTTTTAGTAATGCTACTGTCAGAAAATAAAAAGAGTTAAAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P87362	Bleomycin hydrolase OS=Gallus gallus OX=9031 GN=BLMH PE=1 SV=1
P70645	Bleomycin hydrolase OS=Rattus norvegicus OX=10116 GN=Blmh PE=1 SV=1
Q8R016	Bleomycin hydrolase OS=Mus musculus OX=10090 GN=Blmh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007706 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03051 all species →	Peptidase_C1_2	Peptidase C1-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004134 all species →	Family	Peptidase C1B, bleomycin hydrolase	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10363 all species →	BLEOMYCIN HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070005 all species →	Molecular Function	cysteine-type aminopeptidase activity	Interproscan
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0009636 all species →	Biological Process	response to toxic substance	Interproscan
GO:0043418 all species →	Biological Process	homocysteine catabolic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068721879.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068721879.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

19.4Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	9.40	19.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	19.41
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	18.55
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	16.48
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	15.45
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	14.20
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	13.89
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	13.10
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	13.07
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	12.05
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.72
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	11.70
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.69
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	11.56
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	11.53
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.07
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	11.01
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.96
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	10.73
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.72
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.59
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	10.56
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.57
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	9.42
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.29
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	7.84
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.39
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.50
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	5.23
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.58
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.