Gene detail

Detailed information of XP_068722012.1 in Montipora capricornis

Genomic Location: chr10:25995746...26004192
NR annotation: XP_029200593.2, glycine cleavage system H protein-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068865911.1

GTCTTATTTACTTGATATTAAATGGCGGCTCTAACGGGAGGATTTTGCAGGGTTTTTCCCCGTGTATTCAACTTATCCTCGAAACGGACAGAGTTATGCAGTTCTAGCTATCAACTCAAACGACATCTTCATGTTACTAGAAGGCTCTTAGCAGAGAGGCATTTTACAAAAAAGCATGAATGGATAAGTGTGGACAATGGAGTAGGAACAGTAGGTGTAACAGACTATGCTCAGGAGCAACTTGGAGATATTGTATACGTTCAGCTTCCGGACATTGGGTTAGAAGTGGAAGAGGGAGAGGTGTTTGGTGCTTTGGAAAGTGTGAAAGCTGCCGCTGATGTCTACTCACCAGTATCAGGAACAATCGCTGAGATTAATGGCTTATTGGAAGAGAATCCTGAATTAGTAAATAAATCACCCTATGACGATGGTTGGCTAGTAAAGATTCAACTCACTGAAGCTATGCAGCCAGGACTTCTATCGGAGGCAGAGTATGATCAATTTATCAAGGAATGCCACGATGACCATTGAAACAATTGTTCAAGCATTAAGGAAATAGTGACCTCAATTTTGTAATTATAAAATAACCCTTGTATACAATTTAACaaatttatgataattattgtcataattattgttttcttgcacACCTATTACAATCATGTAATACATGCAAATGCATTTTTGTTCTTCTATCAGTGTGAATTGGTTGTTAAAAGTGTTTGAGGTTGGGATTGAAGAAAAGGAAAGGCTACTGTTTGAACTGTATTAATTTTTTGGTAATGAAAGGTAAAGAAAATACATTTAttgcaatatatatataattatatgttTATATcagttgaaggattaaagaggacgcatcaattctctgtgactctgagtttcgcaCCTACTGTAAGCGCTCGTCAGGCAGACAAGCTCTTAGGtgcgaaactcagagtcacagagaatcgatgcATCCTCTTAAATCCTTCAACTTATatatacttagctctgctaccacagcattgagcactttagatgaGTAGACTCTACCACCACATTTATATTATAAGTTTAAAGATAGAGAGTTTTTACTCTAGTTTCACGCATGAAGTGATCATCAGACTAAAATTGCTGCGCGAGCAACCCTCAGATTTAACGgtaaaattcaaattttaaattaaggACTTTTGGAACAACGCTTTCCGTGATTGGTAGCGAAGAACTTGGCTTCATGGCGACATTTTGTGATCATTTCAAATCTCTTGTTTAACAGATAAGCGCCATGGGTGGACAAAATGCACAATTTCTTGGATAAGTATAAGCTGCAGCGCGAAGGTTTTCCCCGATAAGCGTTTGCCCTCTTGATGATGCGTCATTTGagattgtatatatatatataatatctagctgatcttatgaaaaccggttCCTCCCCACATATCTTAAtaatgtctttaaattagacttgAATAGCTGGGACAGTGGTATCTTCCTTCAGAGCCAATTGCAATGACCACAAAACCATGGAAGACCACATGACAGACTGTCAgggaaatatgtattaaagaattgtttgtgtgaccggaaacgagtttttgtgttttcactGCATGCAATCCAATATCCAGTTTATATATCGTATGACTCTatattgtaattttataattctcccagtattgttaagaaaaagtattaaatattttagagtatCATTGTAGAAACTTGCAAATTAGcatctgttttctggttttgattggaatcaatgctgTTAACAACAGTTTCAAATGTAAACAGATATCCACGATTGCACTTTAATAACCCTATAAGTCAGTGTGGACtgtggacttcggactacggaatctaaactggatatttaccaagatattgtaacaaaaaaaacccaCTGAATTACGGTGAACTTAGAGGAAGTTACCCGTAGCCCCTTGTTATAATTTCTTTGTCCAGGGAGGGAAAATAGGAAATAATTGTATAATATTATTAACATGAAATTTATGATTTGAATATGAGTACAGGTGTTTGAGCCTCAATGTAATGACAATGCATCAACAATGACAGCTTATCTCTTGggttgagatttttttttttttcatgcaggGGCAcagaagggttttttttttctttggaaggATTCTGAACACCATATTATTCTTTAATGTAATAAAAGCAATGTTAGATGTTAACCTGCTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WK5	Glycine cleavage system H protein, mitochondrial OS=Mus musculus OX=10090 GN=Gcsh PE=1 SV=2
Q9N121	Glycine cleavage system H protein, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=GCSH PE=2 SV=1
P20821	Glycine cleavage system H protein, mitochondrial OS=Bos taurus OX=9913 GN=GCSH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01597 all species →	GCV_H	Glycine cleavage H-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033753 all species →	Family	Glycine cleavage system H-protein/Simiate	Interproscan
IPR002930 all species →	Family	Glycine cleavage system H-protein	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR017453 all species →	Family	Glycine cleavage system H-protein, subgroup	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11715 all species →	GLYCINE CLEAVAGE SYSTEM H PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02437	gcvH, GCSH; glycine cleavage system H protein	-	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068722012.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

43.6Max TPM

18.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	18.33	43.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	43.64
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	42.86
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	38.17
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	37.52
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.53
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.32
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	29.84
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	28.12
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.73
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	26.13
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.44
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	25.36
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.34
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	21.62
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.17
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.99
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	18.77
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	18.47
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.00
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.12
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.08
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	15.43
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	15.21
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	14.85
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	14.78
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	11.82
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.06
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.77
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.69
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.