Gene detail

Detailed information of XP_068722483.1 in Montipora capricornis

Genomic Location: chr10:10523002...10548795
NR annotation: XP_029199454.2, aquaporin-7-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43315	Aquaporin-9 OS=Homo sapiens OX=9606 GN=AQP9 PE=1 SV=2
A9Y006	Aquaporin-3 OS=Sus scrofa OX=9823 GN=AQP3 PE=2 SV=1
Q08DE6	Aquaporin-3 OS=Bos taurus OX=9913 GN=AQP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR050363 all species →	Family	Major Intrinsic Protein/Aquaporin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43829 all species →	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0015254 all species →	Molecular Function	glycerol channel activity	Interproscan
GO:0015793 all species →	Biological Process	glycerol transmembrane transport	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068722483.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068722483.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

156.7Max TPM

38.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	38.10	156.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	156.67
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	113.90
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	89.52
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	69.00
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	66.38
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	66.20
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	64.13
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	63.61
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	63.57
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	63.40
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	63.25
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	55.57
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	54.16
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	52.97
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	51.94
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	51.37
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	31.15
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	29.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	27.03
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	25.13
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	23.84
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	22.96
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.00
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.90
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.74
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.45
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.86
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.23
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	3.78
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	3.28
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.67
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.